{
    "type": "genome",
    "identifier": "GCA_015521065.1",
    "organism": "Thermococcus sp.",
    "title": "Thermococcus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Portland State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_015521065.1",
        "bioproject": "PRJNA546572",
        "biosample": "SAMN12837308",
        "wgs_master": "WAOX00000000.1",
        "refseq_category": "na",
        "taxid": "35749",
        "species_taxid": "35749",
        "organism_name": "Thermococcus sp.",
        "infraspecific_name": "",
        "isolate": "S143_62",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/11/16",
        "asm_name": "ASM1552106v1",
        "submitter": "Portland State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/521/065/GCA_015521065.1_ASM1552106v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-11-16",
    "dateModified": "2020-11-16",
    "datePublished": "2020-11-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermococcus sp."
        ],
        "sample_taxid": [
            "35749"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean"
        ],
        "sample_host_location_id": [],
        "data_size": "0.524 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 10.42,
        "strain_heterogeneity": 66.67,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1830464",
        "Number of Sequences": "170",
        "Longest Sequences (bp)": "49210",
        "N50 (bp)": "15261",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.3",
        "Number of CDSs": "1887",
        "Average Protein Length": "267.3",
        "Coding Ratio (%)": "82.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thermococcus nautili",
                "strain": "strain=30-1",
                "accession": "GCA_000585495.1",
                "taxid": 195522,
                "species_taxid": 195522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2453,
                "matched_fragments": 375,
                "total_fragments": 527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus henrietii",
                "strain": "strain=EXT12c",
                "accession": "GCA_900198835.1",
                "taxid": 2016361,
                "species_taxid": 2016361,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.634,
                "matched_fragments": 365,
                "total_fragments": 527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus eurythermalis",
                "strain": "strain=A501",
                "accession": "GCA_000769655.1",
                "taxid": 1505907,
                "species_taxid": 1505907,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4209,
                "matched_fragments": 335,
                "total_fragments": 527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus gammatolerans",
                "strain": "strain=EJ3; DSM 15229",
                "accession": "GCA_000022365.1",
                "taxid": 187878,
                "species_taxid": 187878,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7544,
                "matched_fragments": 261,
                "total_fragments": 527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus cleftensis",
                "strain": "strain=CL1",
                "accession": "GCA_000265525.1",
                "taxid": 163003,
                "species_taxid": 163003,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3907,
                "matched_fragments": 271,
                "total_fragments": 527,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 10.42,
            "strain_heterogeneity": 66.67
        },
        "gtdb_result": [
            {
                "accession": "GCA_015523185.1",
                "gtdb_species": "s__Thermococcus sp015523185",
                "ani": 99.2028,
                "matched_fragments": 437,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.10",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_012027635.1",
                "gtdb_species": "s__Thermococcus sp012027635",
                "ani": 82.2727,
                "matched_fragments": 397,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000585495.1",
                "gtdb_species": "s__Thermococcus nautili",
                "ani": 82.2605,
                "matched_fragments": 375,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "97.44",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900198835.1",
                "gtdb_species": "s__Thermococcus sp900198835",
                "ani": 81.6029,
                "matched_fragments": 367,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002214485.1",
                "gtdb_species": "s__Thermococcus pacificus",
                "ani": 79.5035,
                "matched_fragments": 246,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000265525.1",
                "gtdb_species": "s__Thermococcus cleftensis",
                "ani": 79.3907,
                "matched_fragments": 271,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.89",
                "min_intra_species_ani": "97.89",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000258515.1",
                "gtdb_species": "s__Thermococcus zilligii",
                "ani": 78.668,
                "matched_fragments": 218,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011050175.1",
                "gtdb_species": "s__Thermococcus sp011050175",
                "ani": 78.4869,
                "matched_fragments": 121,
                "total_fragments": 527,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.06,
        "cell_length": 0.06,
        "doubling_h": -0.025,
        "growth_tmp": 84.189,
        "optimum_tmp": 83.045,
        "optimum_ph": 7.116,
        "genome_size": 1965459.444,
        "gc_content": 50.932,
        "coding_genes": 2046.309,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.015,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.833,
        "range_salinity": 0.5,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Methanobacteriota_B",
        "c__Thermococci",
        "o__Thermococcales",
        "f__Thermococcaceae",
        "g__Thermococcus",
        "s__Thermococcus sp015523185"
    ],
    "_genome_taxon": [
        "Thermococcus",
        "sp.",
        "d__Archaea",
        "p__Methanobacteriota_B",
        "c__Thermococci",
        "o__Thermococcales",
        "f__Thermococcaceae",
        "g__Thermococcus",
        "s__Thermococcus sp015523185",
        "Archaea",
        "Methanobacteriota",
        "B",
        "Thermococci",
        "Thermococcales",
        "Thermococcaceae",
        "Thermococcus",
        "Thermococcus",
        "sp015523185"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}