{ "tc_result": [ { "organism_name": "Erwinia iniecta", "strain": "strain=B120", "accession": "GCA_001267535.1", "taxid": 1560201, "species_taxid": 1560201, "relation_to_type": "type", "validated": true, "ani": 78.9896, "matched_fragments": 435, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pantoea] beijingensis", "strain": "strain=JZB2120001", "accession": "GCA_022647505.1", "taxid": 1324864, "species_taxid": 1324864, "relation_to_type": "type", "validated": true, "ani": 78.8759, "matched_fragments": 357, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pantoea] beijingensis", "strain": "strain=LMG 27579", "accession": "GCA_004022165.1", "taxid": 1324864, "species_taxid": 1324864, "relation_to_type": "type", "validated": true, "ani": 78.8623, "matched_fragments": 360, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mixta calida", "strain": "strain=DSM 22759", "accession": "GCA_002953215.1", "taxid": 665913, "species_taxid": 665913, "relation_to_type": "type", "validated": true, "ani": 78.5143, "matched_fragments": 353, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mixta calida", "strain": "strain=LMG 25383", "accession": "GCA_002095355.1", "taxid": 665913, "species_taxid": 665913, "relation_to_type": "type", "validated": true, "ani": 78.4776, "matched_fragments": 336, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mixta gaviniae", "strain": "strain=DSM 22758", "accession": "GCA_002953195.1", "taxid": 665914, "species_taxid": 665914, "relation_to_type": "type", "validated": true, "ani": 78.4301, "matched_fragments": 344, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mixta tenebrionis", "strain": "strain=BIT-26", "accession": "GCA_006517625.1", "taxid": 2562439, "species_taxid": 2562439, "relation_to_type": "type", "validated": true, "ani": 78.3526, "matched_fragments": 343, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea conspicua", "strain": "strain=LMG 24534", "accession": "GCA_002095315.1", "taxid": 472705, "species_taxid": 472705, "relation_to_type": "type", "validated": true, "ani": 78.1582, "matched_fragments": 320, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Izhakiella australiensis", "strain": "strain=D4N98", "accession": "GCA_002006995.1", "taxid": 1926881, "species_taxid": 1926881, "relation_to_type": "type", "validated": true, "ani": 77.9499, "matched_fragments": 252, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia phyllosphaerae", "strain": "strain=CMYE1", "accession": "GCA_019132875.1", "taxid": 2853256, "species_taxid": 2853256, "relation_to_type": "type", "validated": true, "ani": 77.8912, "matched_fragments": 311, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia persicina", "strain": "strain=NBRC 102418", "accession": "GCA_001571305.1", "taxid": 55211, "species_taxid": 55211, "relation_to_type": "type", "validated": true, "ani": 77.8753, "matched_fragments": 355, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia psidii", "strain": "strain=IBSBF 435", "accession": "GCA_003846135.1", "taxid": 69224, "species_taxid": 69224, "relation_to_type": "type", "validated": true, "ani": 77.6823, "matched_fragments": 287, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 77.4858, "matched_fragments": 192, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Buttiauxella warmboldiae", "strain": "strain=CCUG 35512", "accession": "GCA_003818135.1", "taxid": 82993, "species_taxid": 82993, "relation_to_type": "type", "validated": true, "ani": 77.477, "matched_fragments": 229, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovibacter phragmitis", "strain": "strain=MP23", "accession": "GCA_001655675.1", "taxid": 1691903, "species_taxid": 1691903, "relation_to_type": "type", "validated": true, "ani": 77.3756, "matched_fragments": 194, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovibacter plantisponsor", "strain": "strain=DSM 19579", "accession": "GCA_003182475.1", "taxid": 451513, "species_taxid": 451513, "relation_to_type": "type", "validated": true, "ani": 77.3237, "matched_fragments": 193, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salmonella enterica subsp. enterica", "strain": "strain=PartC-Senterica-RM8376", "accession": "GCA_022869965.1", "taxid": 59201, "species_taxid": 28901, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2596, "matched_fragments": 223, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cedecea lapagei", "strain": "strain=NCTC11466", "accession": "GCA_900635955.1", "taxid": 158823, "species_taxid": 158823, "relation_to_type": "type", "validated": true, "ani": 77.1604, "matched_fragments": 216, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Atlantibacter hermannii", "strain": "strain=FDAARGOS_888", "accession": "GCA_016027855.1", "taxid": 565, "species_taxid": 565, "relation_to_type": "type", "validated": true, "ani": 77.14, "matched_fragments": 217, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 77.1164, "matched_fragments": 208, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Buttiauxella massiliensis", "strain": "strain=Marseille-P9829", "accession": "GCA_902500225.1", "taxid": 2831590, "species_taxid": 2831590, "relation_to_type": "type", "validated": true, "ani": 77.078, "matched_fragments": 203, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Atlantibacter hermannii", "strain": "strain=NBRC 105704", "accession": "GCA_000248015.2", "taxid": 565, "species_taxid": 565, "relation_to_type": "type", "validated": true, "ani": 77.0627, "matched_fragments": 217, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella bruchi", "strain": "strain=DSM 27398", "accession": "GCA_003614975.1", "taxid": 1510573, "species_taxid": 1510573, "relation_to_type": "type", "validated": true, "ani": 76.9413, "matched_fragments": 191, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_015655145.1", "gtdb_species": "s__JAATFO01 sp015655145", "ani": 100.0, "matched_fragments": 1303, "total_fragments": 1313, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__JAATFO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_013285385.1", "gtdb_species": "s__PD-1 sp013285385", "ani": 79.3391, "matched_fragments": 458, 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Mangrovibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.41", "min_intra_species_ani": "98.41", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900635495.1", "gtdb_species": "s__Atlantibacter hermannii", "ani": 77.1512, "matched_fragments": 214, "total_fragments": 1313, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Atlantibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "98.59", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 28, "status": "-" } ] }