{ "type": "genome", "identifier": "GCA_015655145.1", "organism": "Enterobacterales bacterium", "title": "Enterobacterales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Czech Academy of Science", "publication": [ {} ], "properties": { "assembly_accession": "GCA_015655145.1", "bioproject": "PRJNA603240", "biosample": "SAMN14420151", "wgs_master": "JAATFO000000000.1", "refseq_category": "na", "taxid": "1993870", "species_taxid": "1993870", "organism_name": "Enterobacterales bacterium", "infraspecific_name": "", "isolate": "bin_230", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/23", "asm_name": "ASM1565514v1", "submitter": "Czech Academy of Science", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/655/145/GCA_015655145.1_ASM1565514v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-23", "dateModified": "2020-11-23", "datePublished": "2020-11-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacterales bacterium" ], "sample_taxid": [ "1993870" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic: Zofinsky prales National Nature Reserve" ], "sample_host_location_id": [], "data_size": "1.197 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 43.0, "max": 43.0 }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4175798", "Number of Sequences": "156", "Longest Sequences (bp)": "120520", "N50 (bp)": "44575", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.0", "Number of CDSs": "3712", "Average Protein Length": "314.0", "Coding Ratio (%)": "83.7", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Erwinia iniecta", "strain": "strain=B120", "accession": "GCA_001267535.1", "taxid": 1560201, "species_taxid": 1560201, "relation_to_type": "type", "validated": true, "ani": 78.9896, "matched_fragments": 435, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pantoea] beijingensis", "strain": "strain=JZB2120001", "accession": "GCA_022647505.1", "taxid": 1324864, "species_taxid": 1324864, "relation_to_type": "type", "validated": true, "ani": 78.8759, "matched_fragments": 357, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pantoea] beijingensis", "strain": "strain=LMG 27579", "accession": "GCA_004022165.1", "taxid": 1324864, "species_taxid": 1324864, "relation_to_type": "type", "validated": true, "ani": 78.8623, "matched_fragments": 360, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mixta calida", "strain": "strain=DSM 22759", "accession": "GCA_002953215.1", "taxid": 665913, "species_taxid": 665913, "relation_to_type": "type", "validated": true, "ani": 78.5143, "matched_fragments": 353, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mixta calida", "strain": "strain=LMG 25383", "accession": "GCA_002095355.1", "taxid": 665913, "species_taxid": 665913, "relation_to_type": "type", "validated": true, "ani": 78.4776, "matched_fragments": 336, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mixta gaviniae", "strain": "strain=DSM 22758", "accession": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovibacter plantisponsor", "strain": "strain=DSM 19579", "accession": "GCA_003182475.1", "taxid": 451513, "species_taxid": 451513, "relation_to_type": "type", "validated": true, "ani": 77.3237, "matched_fragments": 193, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salmonella enterica subsp. enterica", "strain": "strain=PartC-Senterica-RM8376", "accession": "GCA_022869965.1", "taxid": 59201, "species_taxid": 28901, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2596, "matched_fragments": 223, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cedecea lapagei", "strain": "strain=NCTC11466", "accession": "GCA_900635955.1", "taxid": 158823, "species_taxid": 158823, "relation_to_type": "type", "validated": true, "ani": 77.1604, "matched_fragments": 216, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Atlantibacter hermannii", "strain": "strain=FDAARGOS_888", "accession": "GCA_016027855.1", "taxid": 565, "species_taxid": 565, "relation_to_type": "type", "validated": true, "ani": 77.14, "matched_fragments": 217, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 77.1164, "matched_fragments": 208, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Buttiauxella massiliensis", "strain": "strain=Marseille-P9829", "accession": "GCA_902500225.1", "taxid": 2831590, "species_taxid": 2831590, "relation_to_type": "type", "validated": true, "ani": 77.078, "matched_fragments": 203, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { 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