{
    "type": "genome",
    "identifier": "GCA_015708255.1",
    "organism": "Planktothrix agardhii KL2",
    "title": "Planktothrix agardhii KL2",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Tennessee",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_015708255.1",
        "bioproject": "PRJNA675899",
        "biosample": "SAMN16762138",
        "wgs_master": "JADQCT000000000.1",
        "refseq_category": "na",
        "taxid": "2789715",
        "species_taxid": "1160",
        "organism_name": "Planktothrix agardhii KL2",
        "infraspecific_name": "",
        "isolate": "KL2",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/12/01",
        "asm_name": "ASM1570825v1",
        "submitter": "University of Tennessee",
        "gbrs_paired_asm": "GCF_015708255.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/708/255/GCA_015708255.1_ASM1570825v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-12-01",
    "dateModified": "2020-12-01",
    "datePublished": "2020-12-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Planktothrix agardhii KL2"
        ],
        "sample_taxid": [
            "2789715"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Queens, New York, Kissena Lake"
        ],
        "sample_host_location_id": [],
        "data_size": "1.349 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.46,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4765279",
        "Number of Sequences": "334",
        "Longest Sequences (bp)": "88146",
        "N50 (bp)": "24352",
        "Gap Ratio (%)": "0.169980",
        "GCcontent (%)": "39.6",
        "Number of CDSs": "3996",
        "Average Protein Length": "314.4",
        "Coding Ratio (%)": "79.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Planktothrix agardhii",
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                "taxid": 1160,
                "species_taxid": 1160,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1312,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Planktothrix tepida",
                "strain": "strain=PCC9214",
                "accession": "GCA_904830955.1",
                "taxid": 1678309,
                "species_taxid": 1678309,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1103,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Argonema antarcticum",
                "strain": "strain=A004/B2",
                "accession": "GCA_023333585.1",
                "taxid": 2942763,
                "species_taxid": 2942763,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1946,
                "matched_fragments": 83,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oscillatoria acuminata",
                "strain": "strain=PCC 6304",
                "accession": "GCA_000317105.1",
                "taxid": 118323,
                "species_taxid": 118323,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.907,
                "matched_fragments": 92,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Euhalothece natronophila",
                "strain": "strain=Z-M001",
                "accession": "GCA_007904085.1",
                "taxid": 577489,
                "species_taxid": 577489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7104,
                "matched_fragments": 54,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nostoc punctiforme",
                "strain": "strain=ATCC 29133; PCC 73102",
                "accession": "GCA_000020025.1",
                "taxid": 272131,
                "species_taxid": 272131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6354,
                "matched_fragments": 60,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gloeothece citriformis",
                "strain": "strain=PCC 7424",
                "accession": "GCA_000021825.1",
                "taxid": 2546356,
                "species_taxid": 2546356,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6003,
                "matched_fragments": 105,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rippkaea orientalis",
                "strain": "strain=PCC 8801",
                "accession": "GCA_000021805.1",
                "taxid": 2546366,
                "species_taxid": 2546366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5085,
                "matched_fragments": 95,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nostoc favosum",
                "strain": "strain=CHAB 5714",
                "accession": "GCA_020829495.1",
                "taxid": 2907819,
                "species_taxid": 2907819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3855,
                "matched_fragments": 72,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crocosphaera chwakensis",
                "strain": "strain=CCY0110",
                "accession": "GCA_000169335.1",
                "taxid": 2546361,
                "species_taxid": 2546361,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1742,
                "matched_fragments": 88,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dulcicalothrix desertica",
                "strain": "strain=PCC 7102",
                "accession": "GCA_007830875.1",
                "taxid": 32056,
                "species_taxid": 32056,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9881,
                "matched_fragments": 53,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dulcicalothrix desertica",
                "strain": "strain=PCC 7102",
                "accession": "GCA_003991905.1",
                "taxid": 32056,
                "species_taxid": 32056,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9585,
                "matched_fragments": 50,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.46,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003609755.1",
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                "matched_fragments": 1312,
                "total_fragments": 1410,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Planktothrix",
                "ani_circumscription_radius": 96.6657,
                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "98.84",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_900009275.2",
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                "matched_fragments": 1280,
                "total_fragments": 1410,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Planktothrix",
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                "mean_intra_species_ani": "98.32",
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                "num_clustered_genomes": 11,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_900009135.1",
                "gtdb_species": "s__Planktothrix sp900009135",
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                "matched_fragments": 1190,
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Planktothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900009265.2",
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                "matched_fragments": 1162,
                "total_fragments": 1410,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Planktothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCA_001873365.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003456035.1",
                "gtdb_species": "s__Planktothrix sp003456035",
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                "matched_fragments": 785,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900010725.2",
                "gtdb_species": "s__Planktothrix serta",
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                "total_fragments": 1410,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Planktothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.397,
        "cell_length": 0.602,
        "doubling_h": 1.2,
        "growth_tmp": 22.2,
        "optimum_tmp": 20.0,
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        "genome_size": 5342872.5,
        "gc_content": 39.064,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Microcoleaceae",
        "g__Planktothrix",
        "s__Planktothrix agardhii"
    ],
    "_genome_taxon": [
        "Planktothrix",
        "agardhii",
        "KL2",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Microcoleaceae",
        "g__Planktothrix",
        "s__Planktothrix agardhii",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "Cyanobacteriales",
        "Microcoleaceae",
        "Planktothrix",
        "Planktothrix",
        "agardhii"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0001054",
            "label": "algal bloom"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}