{
    "type": "genome",
    "identifier": "GCA_015708265.1",
    "organism": "Cylindrospermopsis raciborskii KL1",
    "title": "Cylindrospermopsis raciborskii KL1",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Tennessee",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_015708265.1",
        "bioproject": "PRJNA675899",
        "biosample": "SAMN16729884",
        "wgs_master": "JADQCS000000000.1",
        "refseq_category": "na",
        "taxid": "2787621",
        "species_taxid": "77022",
        "organism_name": "Cylindrospermopsis raciborskii KL1",
        "infraspecific_name": "",
        "isolate": "KL1",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/12/01",
        "asm_name": "ASM1570826v1",
        "submitter": "University of Tennessee",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/708/265/GCA_015708265.1_ASM1570826v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-12-01",
    "dateModified": "2020-12-01",
    "datePublished": "2020-12-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cylindrospermopsis raciborskii KL1"
        ],
        "sample_taxid": [
            "2787621"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Queens, New York, Kissena Lake"
        ],
        "sample_host_location_id": [],
        "data_size": "1.036 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3657391",
        "Number of Sequences": "100",
        "Longest Sequences (bp)": "268160",
        "N50 (bp)": "164738",
        "Gap Ratio (%)": "0.065894",
        "GCcontent (%)": "40.1",
        "Number of CDSs": "3079",
        "Average Protein Length": "334.3",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Cylindrospermopsis raciborskii",
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                "accession": "GCA_003367075.2",
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                "species_taxid": 77022,
                "relation_to_type": "reftype",
                "validated": true,
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                "matched_fragments": 982,
                "total_fragments": 1168,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anabaena cylindrica",
                "strain": "strain=PCC 7122",
                "accession": "GCA_000317695.1",
                "taxid": 1165,
                "species_taxid": 1165,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3954,
                "matched_fragments": 291,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anabaena cylindrica",
                "strain": "strain=NIES-19",
                "accession": "GCA_002367955.1",
                "taxid": 1165,
                "species_taxid": 1165,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3545,
                "matched_fragments": 288,
                "total_fragments": 1168,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nostoc punctiforme",
                "strain": "strain=ATCC 29133; PCC 73102",
                "accession": "GCA_000020025.1",
                "taxid": 272131,
                "species_taxid": 272131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1878,
                "matched_fragments": 145,
                "total_fragments": 1168,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nostoc favosum",
                "strain": "strain=CHAB 5714",
                "accession": "GCA_020829495.1",
                "taxid": 2907819,
                "species_taxid": 2907819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0518,
                "matched_fragments": 128,
                "total_fragments": 1168,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brasilonema bromeliae",
                "strain": "strain=SPC951",
                "accession": "GCA_012912135.1",
                "taxid": 383615,
                "species_taxid": 383615,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0481,
                "matched_fragments": 83,
                "total_fragments": 1168,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Iningainema tapete",
                "strain": "strain=BLCC-T55",
                "accession": "GCA_014698965.1",
                "taxid": 2806730,
                "species_taxid": 2806730,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9842,
                "matched_fragments": 108,
                "total_fragments": 1168,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Okeania hirsuta",
                "strain": "strain=PAB10Feb10-1",
                "accession": "GCA_003838195.1",
                "taxid": 1458930,
                "species_taxid": 1458930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6446,
                "matched_fragments": 54,
                "total_fragments": 1168,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000175855.1",
                "gtdb_species": "s__Raphidiopsis brookii",
                "ani": 95.4894,
                "matched_fragments": 913,
                "total_fragments": 1168,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Raphidiopsis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.78",
                "min_intra_species_ani": "95.34",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 10,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003367075.1",
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                "ani_circumscription_radius": 96.0828,
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                "min_intra_species_ani": "98.23",
                "mean_intra_species_af": "0.92",
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                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCF_014489415.1",
                "gtdb_species": "s__Raphidiopsis curvispora_A",
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                "matched_fragments": 983,
                "total_fragments": 1168,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Raphidiopsis",
                "ani_circumscription_radius": 96.0828,
                "mean_intra_species_ani": "96.28",
                "min_intra_species_ani": "96.28",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_015207205.1",
                "gtdb_species": "s__Sphaerospermopsis sp015207205",
                "ani": 78.0771,
                "matched_fragments": 496,
                "total_fragments": 1168,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Sphaerospermopsis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002368075.1",
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                "mean_intra_species_ani": "97.99",
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                "num_clustered_genomes": 6,
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            },
            {
                "accession": "GCF_014696825.1",
                "gtdb_species": "s__RDYJ01 sp014696825",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__RDYJ01",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001586785.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_015207755.1",
                "gtdb_species": "s__Nodularia sp015207755",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nodularia",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_013393945.1",
                "gtdb_species": "s__Trichormus sp013393945",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Trichormus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": 0.698,
        "doubling_h": 0.996,
        "growth_tmp": 25.0,
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        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 1.0,
        "motility": 1.0,
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        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
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        "spiral_cell_shape": 0.0
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    "_gtdb_taxon": [
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        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Nostocaceae",
        "g__Raphidiopsis",
        "s__Raphidiopsis brookii"
    ],
    "_genome_taxon": [
        "Cylindrospermopsis",
        "raciborskii",
        "KL1",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Nostocaceae",
        "g__Raphidiopsis",
        "s__Raphidiopsis brookii",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "Cyanobacteriales",
        "Nostocaceae",
        "Raphidiopsis",
        "Raphidiopsis",
        "brookii"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0001054",
            "label": "algal bloom"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}