{ "type": "genome", "identifier": "GCA_016183035.1", "organism": "Deltaproteobacteria bacterium", "title": "Deltaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Innovative Genomics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_016183035.1", "bioproject": "PRJNA640378", "biosample": "SAMN15434855", "wgs_master": "JACPFK000000000.1", "refseq_category": "na", "taxid": "2026735", "species_taxid": "2026735", "organism_name": "Deltaproteobacteria bacterium", "infraspecific_name": "", "isolate": "NC_groundwater_359_Ag_B-0.1um_66_32", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/21", "asm_name": "ASM1618303v1", "submitter": "Innovative Genomics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/183/035/GCA_016183035.1_ASM1618303v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-21", "dateModified": "2020-12-21", "datePublished": "2020-12-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Deltaproteobacteria bacterium" ], "sample_taxid": [ "2026735" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: California, Modesto" ], "sample_host_location_id": [], "data_size": "2.388 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "8650642", "Number of Sequences": "137", "Longest Sequences (bp)": "238012", "N50 (bp)": "96215", "Gap Ratio (%)": "0.000173", "GCcontent (%)": "65.8", "Number of CDSs": "6740", "Average Protein Length": "390.0", "Coding Ratio (%)": "91.2", "Number of rRNAs": "0", "Number of tRNAs": "58", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corallococcus terminator", "strain": "strain=CA054A", "accession": "GCA_003611635.1", "taxid": 2316733, "species_taxid": 2316733, "relation_to_type": "type", "validated": true, "ani": 74.9388, "matched_fragments": 104, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella hybrida", "strain": "strain=DSM 14722", "accession": "GCA_020103775.1", "taxid": 394097, "species_taxid": 394097, "relation_to_type": "type", "validated": true, "ani": 74.9383, "matched_fragments": 98, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella aurantiaca", "strain": "strain=DSM 17044", "accession": "GCA_900109545.1", "taxid": 41, "species_taxid": 41, "relation_to_type": "type", "validated": true, "ani": 74.8991, "matched_fragments": 97, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus praedator", "strain": "strain=CA031B", "accession": "GCA_003612125.1", "taxid": 2316724, "species_taxid": 2316724, "relation_to_type": "type", "validated": true, "ani": 74.8979, "matched_fragments": 115, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haliangium ochraceum", "strain": "strain=DSM 14365", "accession": "GCA_000024805.1", "taxid": 80816, "species_taxid": 80816, "relation_to_type": "type", "validated": true, "ani": 74.8492, "matched_fragments": 203, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter bugurensis", "strain": "strain=KCTC 23077", "accession": "GCA_014652095.1", "taxid": 543356, "species_taxid": 543356, "relation_to_type": "type", "validated": true, "ani": 74.8484, "matched_fragments": 79, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes piscinae", "strain": "strain=DSM 19946", "accession": "GCA_003258855.1", "taxid": 444923, "species_taxid": 444923, "relation_to_type": "type", "validated": true, "ani": 74.8398, "matched_fragments": 71, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lujinxingia vulgaris", "strain": "strain=TMQ4", "accession": "GCA_007997015.1", "taxid": 2600176, "species_taxid": 2600176, "relation_to_type": "type", "validated": true, "ani": 74.8016, "matched_fragments": 63, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes elegans", "strain": "strain=DSM 11907", "accession": "GCA_003258805.1", "taxid": 29408, "species_taxid": 29408, "relation_to_type": "type", "validated": true, "ani": 74.7798, "matched_fragments": 109, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus llansteffanensis", "strain": "strain=CA051B", "accession": "GCA_003612055.1", "taxid": 2316731, "species_taxid": 2316731, "relation_to_type": "type", "validated": true, "ani": 74.7774, "matched_fragments": 126, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus sicarius", "strain": "strain=CA040B", "accession": "GCA_003611735.1", "taxid": 2316726, "species_taxid": 2316726, "relation_to_type": "type", "validated": true, "ani": 74.7734, "matched_fragments": 130, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=DSM 71", "accession": "GCA_002343915.1", "taxid": 54, 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"ani": 74.7403, "matched_fragments": 64, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 74.7297, "matched_fragments": 95, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermoflava", "strain": "strain=N1165", "accession": "GCA_000473265.1", "taxid": 84480, "species_taxid": 84480, "relation_to_type": "type", "validated": true, "ani": 74.724, "matched_fragments": 133, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, "relation_to_type": "type", "validated": true, "ani": 74.7067, "matched_fragments": 55, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylosinus trichosporium", "strain": "strain=OB3b", "accession": "GCA_000178815.2", "taxid": 426, "species_taxid": 426, "relation_to_type": "type", "validated": true, "ani": 74.678, "matched_fragments": 103, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylosinus trichosporium", "strain": "strain=OB3b", "accession": "GCA_002752655.1", "taxid": 426, "species_taxid": 426, "relation_to_type": "type", "validated": true, "ani": 74.6772, "matched_fragments": 107, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter yeojuensis", "strain": "strain=DSM 17673", "accession": "GCA_011742875.1", "taxid": 345309, "species_taxid": 345309, "relation_to_type": "type", "validated": true, "ani": 74.6746, "matched_fragments": 57, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000371885.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 74.6712, "matched_fragments": 98, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000739085.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 74.6688, "matched_fragments": 99, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 74.6685, "matched_fragments": 132, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium indicum", "strain": "strain=DSM 19969", "accession": "GCA_000422385.1", "taxid": 358100, "species_taxid": 358100, "relation_to_type": "type", "validated": true, "ani": 74.6591, "matched_fragments": 115, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Albimonas pacifica", "strain": "strain=CGMCC 1.11030", "accession": "GCA_900113695.1", "taxid": 1114924, "species_taxid": 1114924, "relation_to_type": "type", "validated": true, "ani": 74.6584, "matched_fragments": 122, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora rosea subsp. aerata", "strain": "strain=NBRC 14624", "accession": "GCA_016863075.1", "taxid": 147065, "species_taxid": 58117, "relation_to_type": "type", "validated": true, "ani": 74.6394, "matched_fragments": 107, "total_fragments": 2815, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, 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"GCA_900696455.1", "gtdb_species": "s__UBA2376 sp900696455", "ani": 74.8178, "matched_fragments": 250, "total_fragments": 2815, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Haliangiales;f__Haliangiaceae;g__UBA2376", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "97.29", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003577305.1", "gtdb_species": "s__SCN-69-89 sp003577305", "ani": 74.8163, "matched_fragments": 70, "total_fragments": 2815, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__SCN-69-89", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.77", "min_intra_species_ani": "99.54", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000418325.1", "gtdb_species": "s__Sorangium 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