{ "type": "genome", "identifier": "GCA_016190045.1", "organism": "Verrucomicrobiota bacterium", "title": "Verrucomicrobiota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Innovative Genomics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_016190045.1", "bioproject": "PRJNA640378", "biosample": "SAMN15435172", "wgs_master": "JACPRJ000000000.1", "refseq_category": "na", "taxid": "2026799", "species_taxid": "2026799", "organism_name": "Verrucomicrobiota bacterium", "infraspecific_name": "", "isolate": "NC_groundwater_676_Ag_B-0.1um_64_32", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/21", "asm_name": "ASM1619004v1", "submitter": "Innovative Genomics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/190/045/GCA_016190045.1_ASM1619004v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-21", "dateModified": "2020-12-21", "datePublished": "2020-12-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Verrucomicrobiota bacterium" ], "sample_taxid": [ "2026799" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: California, Modesto" ], "sample_host_location_id": [], "data_size": "2.240 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 85.65, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7995204", "Number of Sequences": "536", "Longest Sequences (bp)": "91221", "N50 (bp)": "20413", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.7", "Number of CDSs": "5885", "Average Protein Length": "354.4", "Coding Ratio (%)": "78.3", "Number of rRNAs": "0", "Number of tRNAs": "53", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ereboglobus luteus", "strain": "strain=Ho45", "accession": "GCA_003096195.1", "taxid": 1796921, "species_taxid": 1796921, "relation_to_type": "type", "validated": true, "ani": 75.8304, "matched_fragments": 51, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chthoniobacter flavus", "strain": "strain=DSM 22515", "accession": "GCA_004341915.1", "taxid": 191863, "species_taxid": 191863, "relation_to_type": "type", "validated": true, "ani": 75.3201, "matched_fragments": 109, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chthoniobacter flavus", "strain": "strain=Ellin428", "accession": "GCA_000173075.1", "taxid": 191863, "species_taxid": 191863, "relation_to_type": "type", "validated": true, "ani": 75.3098, "matched_fragments": 108, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geminisphaera colitermitum", "strain": "strain=TAV2", "accession": "GCA_000171235.2", "taxid": 1148786, "species_taxid": 1148786, "relation_to_type": "type", "validated": true, "ani": 74.9546, "matched_fragments": 54, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluolicum", "strain": "strain=T", "accession": "GCA_012911005.2", "taxid": 90060, "species_taxid": 90060, "relation_to_type": "type", "validated": true, "ani": 74.899, "matched_fragments": 64, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluclasticum", "strain": "strain=MF63", "accession": "GCA_000378245.1", "taxid": 92003, "species_taxid": 92003, "relation_to_type": "type", "validated": true, "ani": 74.7512, "matched_fragments": 80, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium platani", "strain": "strain=JCM 14648", "accession": "GCA_001043885.1", "taxid": 427683, "species_taxid": 427683, "relation_to_type": "type", "validated": true, "ani": 74.7326, "matched_fragments": 94, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium vignae", "strain": "strain=LMG 28791", "accession": "GCA_004114425.1", "taxid": 1549949, "species_taxid": 1549949, "relation_to_type": "type", "validated": true, "ani": 74.7228, "matched_fragments": 83, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium platani", "strain": "strain=PMB02", "accession": "GCA_001653715.1", "taxid": 427683, "species_taxid": 427683, "relation_to_type": "type", "validated": true, "ani": 74.7166, "matched_fragments": 99, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum tolulyticum", "strain": "strain=ATCC 51758", "accession": "GCA_900156155.1", "taxid": 34027, "species_taxid": 34027, "relation_to_type": "type", "validated": true, "ani": 74.6804, "matched_fragments": 80, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera humireducens", "strain": "strain=SgZ-1", "accession": "GCA_001051995.2", "taxid": 1134435, "species_taxid": 1134435, "relation_to_type": "type", "validated": true, "ani": 74.6785, "matched_fragments": 57, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbiconiux moechotypicola", "strain": "strain=KCTC 19653", "accession": "GCA_024979255.1", "taxid": 637393, "species_taxid": 637393, "relation_to_type": "type", "validated": true, "ani": 74.6773, "matched_fragments": 58, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catenulispora rubra", "strain": "strain=DSM 44948", "accession": "GCA_015356825.1", "taxid": 280293, "species_taxid": 280293, "relation_to_type": "type", "validated": true, "ani": 74.6595, "matched_fragments": 166, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myceligenerans salitolerans", "strain": "strain=XHU 5031", "accession": "GCA_017349295.1", "taxid": 1230528, "species_taxid": 1230528, "relation_to_type": "type", "validated": true, "ani": 74.6535, "matched_fragments": 55, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nevskia soli", "strain": "strain=DSM 19509", "accession": "GCA_000711955.1", "taxid": 418856, "species_taxid": 418856, "relation_to_type": "type", "validated": true, "ani": 74.6273, "matched_fragments": 61, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas variicoloris", "strain": "strain=DSM 15731", "accession": "GCA_000382285.1", "taxid": 254408, "species_taxid": 254408, "relation_to_type": "type", "validated": true, "ani": 74.619, "matched_fragments": 91, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubellimicrobium mesophilum", "strain": "strain=DSM 19309", "accession": "GCA_000600335.2", "taxid": 1123067, "species_taxid": 1123067, "relation_to_type": "type", "validated": true, "ani": 74.591, "matched_fragments": 65, "total_fragments": 2382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kutzneria buriramensis", "strain": "strain=DSM 45791", "accession": "GCA_003387475.1", "taxid": 1045776, "species_taxid": 1045776, "relation_to_type": "type", "validated": true, "ani": 74.5739, "matched_fragments": 153, 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