{
    "type": "genome",
    "identifier": "GCA_016283735.1",
    "organism": "Muribaculaceae bacterium",
    "title": "Muribaculaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Baqiyatallah University of Medical Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_016283735.1",
        "bioproject": "PRJNA631951",
        "biosample": "SAMN16243649",
        "wgs_master": "JAEENP000000000.1",
        "refseq_category": "na",
        "taxid": "2498093",
        "species_taxid": "2498093",
        "organism_name": "Muribaculaceae bacterium",
        "infraspecific_name": "",
        "isolate": "Tb.RUG.266",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/12/22",
        "asm_name": "ASM1628373v1",
        "submitter": "Baqiyatallah University of Medical Sciences",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/283/735/GCA_016283735.1_ASM1628373v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-12-22",
    "dateModified": "2020-12-22",
    "datePublished": "2020-12-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Muribaculaceae bacterium"
        ],
        "sample_taxid": [
            "2498093"
        ],
        "sample_host_organism": [
            "cattle"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Iran: Karaj"
        ],
        "sample_host_location_id": [],
        "data_size": "0.763 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.14,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2648519",
        "Number of Sequences": "114",
        "Longest Sequences (bp)": "169143",
        "N50 (bp)": "36754",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.8",
        "Number of CDSs": "2038",
        "Average Protein Length": "362.0",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sodaliphilus pleomorphus",
                "strain": "strain=Oil-RF-744-WCA-WT-10",
                "accession": "GCA_009676955.1",
                "taxid": 2606626,
                "species_taxid": 2606626,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5706,
                "matched_fragments": 98,
                "total_fragments": 828,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sodaliphilus pleomorphus",
                "strain": "strain=Oil-RF-744-WCA-WT-10",
                "accession": "GCA_009696565.1",
                "taxid": 2606626,
                "species_taxid": 2606626,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5622,
                "matched_fragments": 96,
                "total_fragments": 828,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.14,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902785925.1",
                "gtdb_species": "s__Sodaliphilus sp902785925",
                "ani": 96.9992,
                "matched_fragments": 717,
                "total_fragments": 828,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.61",
                "min_intra_species_ani": "97.00",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902792435.1",
                "gtdb_species": "s__Sodaliphilus sp902792435",
                "ani": 83.6152,
                "matched_fragments": 525,
                "total_fragments": 828,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.75",
                "min_intra_species_ani": "96.43",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_902762385.1",
                "gtdb_species": "s__Sodaliphilus sp902762385",
                "ani": 83.3074,
                "matched_fragments": 558,
                "total_fragments": 828,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.01",
                "min_intra_species_ani": "95.72",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_002353285.1",
                "gtdb_species": "s__Sodaliphilus sp002353285",
                "ani": 81.3825,
                "matched_fragments": 372,
                "total_fragments": 828,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.36",
                "min_intra_species_ani": "97.36",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900318065.1",
                "gtdb_species": "s__Sodaliphilus sp900318065",
                "ani": 81.252,
                "matched_fragments": 459,
                "total_fragments": 828,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "97.91",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 24,
                "status": "-"
            },
            {
                "accession": "GCA_017451225.1",
                "gtdb_species": "s__Sodaliphilus sp017451225",
                "ani": 81.1719,
                "matched_fragments": 351,
                "total_fragments": 828,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905233845.1",
                "gtdb_species": "s__Sodaliphilus sp905233845",
                "ani": 80.4019,
                "matched_fragments": 436,
                "total_fragments": 828,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017548365.1",
                "gtdb_species": "s__Sodaliphilus sp017548365",
                "ani": 80.2427,
                "matched_fragments": 412,
                "total_fragments": 828,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900318255.1",
                "gtdb_species": "s__Sodaliphilus sp900318255",
                "ani": 80.1446,
                "matched_fragments": 405,
                "total_fragments": 828,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.43",
                "min_intra_species_ani": "97.80",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_017964485.1",
                "gtdb_species": "s__Sodaliphilus sp017964485",
                "ani": 79.9249,
                "matched_fragments": 372,
                "total_fragments": 828,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.79",
                "min_intra_species_ani": "96.79",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017618355.1",
                "gtdb_species": "s__Sodaliphilus sp017618355",
                "ani": 79.8176,
                "matched_fragments": 358,
                "total_fragments": 828,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017557625.1",
                "gtdb_species": "s__Sodaliphilus sp017557625",
                "ani": 79.712,
                "matched_fragments": 368,
                "total_fragments": 828,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Sodaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 3306764.5,
        "gc_content": 50.1,
        "coding_genes": 2641.0,
        "rRNA16S_genes": null,
        "tRNA_genes": 54.0,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Muribaculaceae",
        "g__Sodaliphilus",
        "s__Sodaliphilus sp902785925"
    ],
    "_genome_taxon": [
        "Muribaculaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Muribaculaceae",
        "g__Sodaliphilus",
        "s__Sodaliphilus sp902785925",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Muribaculaceae",
        "Sodaliphilus",
        "Sodaliphilus",
        "sp902785925"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}