{
    "type": "genome",
    "identifier": "GCA_016288405.1",
    "organism": "bacterium",
    "title": "bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Baqiyatallah University of Medical Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_016288405.1",
        "bioproject": "PRJNA631951",
        "biosample": "SAMN16243973",
        "wgs_master": "JAEEZA000000000.1",
        "refseq_category": "na",
        "taxid": "1869227",
        "species_taxid": "1869227",
        "organism_name": "bacterium",
        "infraspecific_name": "",
        "isolate": "Tb.RUG.73",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/12/22",
        "asm_name": "ASM1628840v1",
        "submitter": "Baqiyatallah University of Medical Sciences",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/288/405/GCA_016288405.1_ASM1628840v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-12-22",
    "dateModified": "2020-12-22",
    "datePublished": "2020-12-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "bacterium"
        ],
        "sample_taxid": [
            "1869227"
        ],
        "sample_host_organism": [
            "cattle"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Iran: Karaj"
        ],
        "sample_host_location_id": [],
        "data_size": "0.533 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 93.52,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1861877",
        "Number of Sequences": "150",
        "Longest Sequences (bp)": "51148",
        "N50 (bp)": "20541",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.7",
        "Number of CDSs": "1403",
        "Average Protein Length": "363.4",
        "Coding Ratio (%)": "82.2",
        "Number of rRNAs": "2",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 93.52,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_002309575.1",
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                "gtdb_taxonomy": "d__Bacteria;p__UBP6;c__UBA1177;o__UBA1177;f__UBA1177;g__UBA1177",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.91",
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                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017615095.1",
                "gtdb_species": "s__UBA1177 sp017615095",
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                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__UBP6;c__UBA1177;o__UBA1177;f__UBA1177;g__UBA1177",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002310035.1",
                "gtdb_species": "s__UBA1177 sp002310035",
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                "matched_fragments": 157,
                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__UBP6;c__UBA1177;o__UBA1177;f__UBA1177;g__UBA1177",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902774115.1",
                "gtdb_species": "s__UBA1177 sp902774115",
                "ani": 81.1268,
                "matched_fragments": 196,
                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__UBP6;c__UBA1177;o__UBA1177;f__UBA1177;g__UBA1177",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.80",
                "min_intra_species_ani": "96.80",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905233945.1",
                "gtdb_species": "s__UBA1177 sp905233945",
                "ani": 80.8443,
                "matched_fragments": 196,
                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__UBP6;c__UBA1177;o__UBA1177;f__UBA1177;g__UBA1177",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002310995.1",
                "gtdb_species": "s__UBA1177 sp002310995",
                "ani": 80.7556,
                "matched_fragments": 159,
                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__UBP6;c__UBA1177;o__UBA1177;f__UBA1177;g__UBA1177",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.84",
                "min_intra_species_ani": "99.84",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017963125.1",
                "gtdb_species": "s__UBA1177 sp017963125",
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                "matched_fragments": 198,
                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__UBP6;c__UBA1177;o__UBA1177;f__UBA1177;g__UBA1177",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902780365.1",
                "gtdb_species": "s__UBA1177 sp902780365",
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                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__UBP6;c__UBA1177;o__UBA1177;f__UBA1177;g__UBA1177",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017405875.1",
                "gtdb_species": "s__UBA1177 sp017405875",
                "ani": 80.2661,
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                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__UBP6;c__UBA1177;o__UBA1177;f__UBA1177;g__UBA1177",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.50",
                "min_intra_species_ani": "97.50",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017645765.1",
                "gtdb_species": "s__UBA1177 sp017645765",
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                "matched_fragments": 193,
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                "gtdb_taxonomy": "d__Bacteria;p__UBP6;c__UBA1177;o__UBA1177;f__UBA1177;g__UBA1177",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017961325.1",
                "gtdb_species": "s__UBA1177 sp017961325",
                "ani": 80.0491,
                "matched_fragments": 166,
                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__UBP6;c__UBA1177;o__UBA1177;f__UBA1177;g__UBA1177",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905235605.1",
                "gtdb_species": "s__UBA1177 sp905235605",
                "ani": 79.3124,
                "matched_fragments": 180,
                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__UBP6;c__UBA1177;o__UBA1177;f__UBA1177;g__UBA1177",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "99.00",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__UBP6",
        "c__UBA1177",
        "o__UBA1177",
        "f__UBA1177",
        "g__UBA1177",
        "s__UBA1177 sp002309575"
    ],
    "_genome_taxon": [
        "bacterium",
        "d__Bacteria",
        "p__UBP6",
        "c__UBA1177",
        "o__UBA1177",
        "f__UBA1177",
        "g__UBA1177",
        "s__UBA1177 sp002309575",
        "Bacteria",
        "UBP6",
        "UBA1177",
        "UBA1177",
        "UBA1177",
        "UBA1177",
        "UBA1177",
        "sp002309575"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}