{ "type": "genome", "identifier": "GCA_016462425.1", "organism": "Rhodococcus sp. (in: high G+C Gram-positive bacteria)", "title": "Rhodococcus sp. (in: high G+C Gram-positive bacteria)", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Minnesota Duluth", "publication": [ {} ], "properties": { "assembly_accession": "GCA_016462425.1", "bioproject": "PRJNA663590", "biosample": "SAMN16655431", "wgs_master": "JAEMTG000000000.1", "refseq_category": "na", "taxid": "1831", "species_taxid": "1831", "organism_name": "Rhodococcus sp. (in: high G+C Gram-positive bacteria)", "infraspecific_name": "", "isolate": "SupBloom_Metag_026", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/03", "asm_name": "ASM1646242v1", "submitter": "University of Minnesota Duluth", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/462/425/GCA_016462425.1_ASM1646242v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-03", "dateModified": "2021-01-03", "datePublished": "2021-01-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodococcus sp. (in: high G+C Gram-positive bacteria)" ], "sample_taxid": [ "1831" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: western arm Lake Superior" ], "sample_host_location_id": [], "data_size": "1.489 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5321055", "Number of Sequences": "206", "Longest Sequences (bp)": "242934", "N50 (bp)": "43952", "Gap Ratio (%)": "0.149031", "GCcontent (%)": "64.7", "Number of CDSs": "4904", "Average Protein Length": "316.3", "Coding Ratio (%)": "87.5", "Number of rRNAs": "1", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodococcus 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"GCA_001895005.1", "taxid": 278209, "species_taxid": 278209, "relation_to_type": "type", "validated": true, "ani": 79.7512, "matched_fragments": 720, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus spelaei", "strain": "strain=C9-5", "accession": "GCA_006704125.1", "taxid": 2546320, "species_taxid": 2546320, "relation_to_type": "type", "validated": true, "ani": 78.7917, "matched_fragments": 467, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus wratislaviensis", "strain": "strain=NCTC13229", "accession": "GCA_900455735.1", "taxid": 44752, "species_taxid": 44752, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4249, "matched_fragments": 539, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella equi", "strain": "strain=NCTC1621", "accession": "GCA_900455845.1", "taxid": 43767, "species_taxid": 43767, "relation_to_type": "type", "validated": true, "ani": 78.3814, "matched_fragments": 451, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella defluvii", "strain": "strain=Ca11", "accession": "GCA_000738775.1", "taxid": 1323361, "species_taxid": 1323361, "relation_to_type": "type", "validated": true, "ani": 78.2832, "matched_fragments": 466, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus cavernicola", "strain": "strain=C1-24", "accession": "GCA_008297975.1", "taxid": 2495913, "species_taxid": 2495913, "relation_to_type": "type", "validated": true, "ani": 78.0724, "matched_fragments": 387, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia bhagyanarayanae", "strain": "strain=DSM 103495", "accession": "GCA_006716565.1", "taxid": 1215925, "species_taxid": 1215925, "relation_to_type": "type", "validated": true, 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"quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }