{ "type": "genome", "identifier": "GCA_016463845.1", "organism": "Nocardioides sp.", "title": "Nocardioides sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "University of Minnesota Duluth", "publication": [ {} ], "properties": { "assembly_accession": "GCA_016463845.1", "bioproject": "PRJNA663590", "biosample": "SAMN16655359", "wgs_master": "JAEMQM000000000.1", "refseq_category": "na", "taxid": "35761", "species_taxid": "35761", "organism_name": "Nocardioides sp.", "infraspecific_name": "", "isolate": "SupBloom_Metag_034", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/03", "asm_name": "ASM1646384v1", "submitter": "University of Minnesota Duluth", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/463/845/GCA_016463845.1_ASM1646384v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-03", "dateModified": "2021-01-03", "datePublished": "2021-01-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides sp." ], "sample_taxid": [ "35761" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: western arm Lake Superior" ], "sample_host_location_id": [], "data_size": "0.805 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3021698", "Number of Sequences": "838", "Longest Sequences (bp)": "15856", "N50 (bp)": "4102", "Gap Ratio (%)": "0.135917", "GCcontent (%)": "74.1", "Number of CDSs": "2125", "Average Protein Length": "294.5", "Coding Ratio (%)": "62.1", "Number of rRNAs": "0", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides kribbensis", "strain": "strain=DSM 16314", "accession": "GCA_015070375.1", "taxid": 305517, "species_taxid": 305517, "relation_to_type": "type", "validated": true, "ani": 98.9187, "matched_fragments": 532, "total_fragments": 537, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013409965.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 83.1135, "matched_fragments": 418, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013466785.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 83.0177, "matched_fragments": 422, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinus", "strain": "strain=DSM 18248", "accession": "GCA_013408145.1", "taxid": 374514, "species_taxid": 374514, "relation_to_type": "type", "validated": true, "ani": 82.1035, "matched_fragments": 392, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 81.8058, "matched_fragments": 393, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luti", "strain": "strain=KIGAM211", "accession": "GCA_014212315.1", "taxid": 2761101, "species_taxid": 2761101, "relation_to_type": "type", "validated": true, "ani": 81.7859, "matched_fragments": 389, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=CGMCC 4.7183", "accession": "GCA_014646035.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 81.6299, "matched_fragments": 402, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=SC8A-24", "accession": "GCA_014266025.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 81.6154, "matched_fragments": 406, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lijunqiniae", "strain": "strain=S-531", "accession": "GCA_015024225.1", "taxid": 2760832, "species_taxid": 2760832, "relation_to_type": "type", "validated": true, "ani": 81.6082, "matched_fragments": 411, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides perillae", "strain": "strain=DSM 24552", "accession": "GCA_013409425.1", "taxid": 1119534, "species_taxid": 1119534, "relation_to_type": "type", "validated": true, "ani": 81.5813, "matched_fragments": 386, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 81.5138, "matched_fragments": 377, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides anomalus", "strain": "strain=HKS04", "accession": "GCA_011046535.1", "taxid": 2712223, "species_taxid": 2712223, "relation_to_type": "type", "validated": true, "ani": 81.0494, "matched_fragments": 405, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 80.8812, "matched_fragments": 379, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 80.768, "matched_fragments": 354, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 80.3521, "matched_fragments": 320, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides coralli", "strain": "strain=SCSIO 67246", "accession": "GCA_019880385.1", "taxid": 2872154, "species_taxid": 2872154, "relation_to_type": "type", "validated": true, "ani": 79.8574, "matched_fragments": 335, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humilatus", "strain": "strain=BN130099", "accession": "GCA_008373755.1", "taxid": 2607660, "species_taxid": 2607660, "relation_to_type": "type", "validated": true, "ani": 79.8489, "matched_fragments": 324, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sambongensis", "strain": "strain=KUDC 5002", "accession": "GCA_006494815.1", "taxid": 2589074, "species_taxid": 2589074, "relation_to_type": "type", "validated": true, "ani": 79.5941, "matched_fragments": 337, "total_fragments": 537, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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