{ "type": "genome", "identifier": "GCA_016708055.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Aalborg University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_016708055.1", "bioproject": "PRJNA629478", "biosample": "SAMN16425722", "wgs_master": "JADJGM000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "Damh_18-Q3-R51-60_BAT3C.98", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/19", "asm_name": "ASM1670805v1", "submitter": "Aalborg University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/708/055/GCA_016708055.1_ASM1670805v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-19", "dateModified": "2021-01-19", "datePublished": "2021-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark: Damhusaen" ], "sample_host_location_id": [], "data_size": "0.907 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3314024", "Number of Sequences": "20", "Longest Sequences (bp)": "314559", "N50 (bp)": "253494", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.6", "Number of CDSs": "3252", "Average Protein Length": "318.0", "Coding Ratio (%)": "93.6", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Steroidobacter gossypii", "strain": "strain=S1-65", "accession": "GCA_016801985.1", "taxid": 2805490, "species_taxid": 2805490, "relation_to_type": "type", "validated": true, "ani": 77.7232, "matched_fragments": 170, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter agariperforans", "strain": "strain=KA5-B", "accession": "GCA_004138335.1", "taxid": 268404, "species_taxid": 268404, "relation_to_type": "type", "validated": true, "ani": 77.6583, "matched_fragments": 167, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter agaridevorans", "strain": "strain=SA29-B", "accession": "GCA_009932555.1", "taxid": 2695856, "species_taxid": 2695856, "relation_to_type": "type", "validated": true, "ani": 77.4267, "matched_fragments": 181, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter soli", "strain": "strain=JW-3", "accession": "GCA_004138485.1", "taxid": 2497877, "species_taxid": 2497877, "relation_to_type": "type", "validated": true, "ani": 77.3242, "matched_fragments": 172, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter cummioxidans", "strain": "strain=35Y", "accession": "GCA_003104955.1", "taxid": 1803913, "species_taxid": 1803913, "relation_to_type": "type", "validated": true, "ani": 77.2861, "matched_fragments": 173, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas taiwanensis", "strain": "strain=DSM 22914", "accession": "GCA_010093135.1", "taxid": 176598, "species_taxid": 176598, "relation_to_type": "type", "validated": true, "ani": 76.9539, "matched_fragments": 173, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter spathiphylli", "strain": "strain=B39", "accession": "GCA_000264295.1", "taxid": 347483, "species_taxid": 347483, "relation_to_type": "type", "validated": true, "ani": 76.9523, "matched_fragments": 169, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalocapsa marina", "strain": "strain=DSM 19078", "accession": "GCA_008632335.1", "taxid": 424902, "species_taxid": 424902, "relation_to_type": "type", "validated": true, "ani": 76.8466, "matched_fragments": 122, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter aestuarii", "strain": "strain=JCM 31130", "accession": "GCA_006546775.1", "taxid": 1706195, "species_taxid": 1706195, "relation_to_type": "type", "validated": true, "ani": 76.787, "matched_fragments": 136, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=J1A", "accession": "GCA_003967275.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 76.7405, "matched_fragments": 101, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=DSM 103923", "accession": "GCA_004346085.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 76.7275, "matched_fragments": 99, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=DSM 18010", "accession": "GCA_000426365.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 76.6598, "matched_fragments": 187, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiobacillus thioparus", "strain": "strain=DSM 505", "accession": "GCA_000373385.1", "taxid": 931, "species_taxid": 931, "relation_to_type": "type", "validated": true, "ani": 76.4933, "matched_fragments": 91, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 76.4427, "matched_fragments": 204, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fluviicoccus keumensis", "strain": "strain=DSM 105135", "accession": "GCA_004217445.1", "taxid": 1435465, "species_taxid": 1435465, "relation_to_type": "type", "validated": true, "ani": 76.3235, "matched_fragments": 72, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella brevitalea", "strain": "strain=DSM 7029", "accession": "GCA_001017435.1", "taxid": 413882, "species_taxid": 413882, "relation_to_type": "type", "validated": true, "ani": 76.1043, "matched_fragments": 160, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelomonas puraquae", "strain": "strain=CCUG 52769", "accession": "GCA_002205845.1", "taxid": 431059, "species_taxid": 431059, "relation_to_type": "type", "validated": true, "ani": 76.0905, "matched_fragments": 172, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas australica", "strain": "strain=DSM 1124", "accession": "GCA_000430725.1", "taxid": 364039, "species_taxid": 364039, "relation_to_type": "type", "validated": true, "ani": 76.0589, "matched_fragments": 255, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas caseinilytica", "strain": "strain=G-1-1-14", "accession": "GCA_012927045.1", "taxid": 2728836, "species_taxid": 2728836, "relation_to_type": "type", "validated": true, "ani": 76.0349, "matched_fragments": 234, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas aeria", "strain": "strain=CFCC 13393", "accession": "GCA_009760915.1", "taxid": 2590212, "species_taxid": 2590212, "relation_to_type": "type", "validated": true, "ani": 76.022, "matched_fragments": 260, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis", "strain": "strain=AM401", "accession": "GCA_006636215.1", "taxid": 2590453, "species_taxid": 2590453, "relation_to_type": "type", "validated": true, "ani": 75.1311, "matched_fragments": 119, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016720075.1", "gtdb_species": "s__ZC4RG30 sp016720075", "ani": 98.8456, "matched_fragments": 1040, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__ZC4RG30", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.64", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_003242275.1", "gtdb_species": "s__ZC4RG30 sp003242275", "ani": 81.1519, "matched_fragments": 466, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__ZC4RG30", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015655465.1", "gtdb_species": "s__ZC4RG30 sp015655465", "ani": 79.8943, "matched_fragments": 390, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__ZC4RG30", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903868595.1", "gtdb_species": "s__ZC4RG30 sp903868595", "ani": 79.4513, "matched_fragments": 364, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__ZC4RG30", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009923475.1", "gtdb_species": "s__UBA964 sp009923475", "ani": 78.7253, "matched_fragments": 135, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__UBA964", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018241455.1", "gtdb_species": "s__FEN-1191 sp018241455", "ani": 78.1987, "matched_fragments": 181, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__FEN-1191", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018240525.1", "gtdb_species": "s__13-2-20CM-66-19 sp018240525", "ani": 78.0923, "matched_fragments": 271, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__13-2-20CM-66-19", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016707425.1", "gtdb_species": "s__JADJHU01 sp016707425", "ani": 77.9212, "matched_fragments": 179, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__JADJHU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903938365.1", "gtdb_species": "s__UBA964 sp903938365", "ani": 77.8001, "matched_fragments": 249, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__UBA964", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", "min_intra_species_ani": "99.13", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_902826575.1", "gtdb_species": "s__CADEFQ01 sp902826575", "ani": 77.6648, "matched_fragments": 216, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__CADEFQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903908825.1", "gtdb_species": "s__ZC4RG30 sp903908825", "ani": 77.619, "matched_fragments": 233, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__ZC4RG30", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902826225.1", "gtdb_species": "s__CADEED01 sp902826225", "ani": 77.5625, "matched_fragments": 207, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__CADEED01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014359565.1", "gtdb_species": "s__Immundisolibacter sp014359565", "ani": 76.6576, "matched_fragments": 153, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Immundisolibacterales;f__Immundisolibacteraceae;g__Immundisolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014873965.1", "gtdb_species": "s__VBDL01 sp014873965", "ani": 76.4059, "matched_fragments": 223, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__VBDL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006386545.1", "gtdb_species": "s__Pseudorivibacter rhizosphaerae", "ani": 76.2239, "matched_fragments": 191, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudorivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003265685.1", "gtdb_species": "s__Piscinibacter caeni", "ani": 76.1996, "matched_fragments": 246, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Piscinibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004011805.1", "gtdb_species": "s__Piscinibacter defluvii", "ani": 76.1317, "matched_fragments": 253, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Piscinibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Steroidobacterales", "f__Steroidobacteraceae", "g__ZC4RG30", "s__ZC4RG30 sp016720075" ], "_genome_taxon": [ "Pseudomonadota", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Steroidobacterales", "f__Steroidobacteraceae", "g__ZC4RG30", "s__ZC4RG30 sp016720075", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Steroidobacterales", "Steroidobacteraceae", "ZC4RG30", "ZC4RG30", "sp016720075" ], "_meo": [ { "id": "MEO_0000014", "label": "activated sludge" } ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }