{ "type": "genome", "identifier": "GCA_016708725.1", "organism": "Rhodoferax sp.", "title": "Rhodoferax sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Aalborg University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_016708725.1", "bioproject": "PRJNA629478", "biosample": "SAMN16425686", "wgs_master": "JADJFE000000000.1", "refseq_category": "na", "taxid": "50421", "species_taxid": "50421", "organism_name": "Rhodoferax sp.", "infraspecific_name": "", "isolate": "Bjer_18-Q3-R1-45_BATAC.458", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/19", "asm_name": "ASM1670872v1", "submitter": "Aalborg University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/708/725/GCA_016708725.1_ASM1670872v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-19", "dateModified": "2021-01-19", "datePublished": "2021-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodoferax sp." ], "sample_taxid": [ "50421" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark: Bjergmarken" ], "sample_host_location_id": [], "data_size": "1.699 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.39, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6086223", "Number of Sequences": "40", "Longest Sequences (bp)": "696650", "N50 (bp)": "341758", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.7", "Number of CDSs": "5766", "Average Protein Length": "303.8", "Coding Ratio (%)": "86.4", "Number of rRNAs": "6", "Number of tRNAs": "58", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodoferax lacus", "strain": "strain=IMCC26218", "accession": "GCA_003415675.1", "taxid": 2184758, "species_taxid": 2184758, "relation_to_type": "type", "validated": true, "ani": 77.6758, "matched_fragments": 309, "total_fragments": 2009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax fermentans", "strain": "strain=JCM 7819", "accession": "GCA_002017865.1", "taxid": 28066, "species_taxid": 28066, "relation_to_type": "type", "validated": true, "ani": 77.5929, "matched_fragments": 263, "total_fragments": 2009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaromonas jejuensis", "strain": "strain=NBRC 106434", "accession": "GCA_001598235.1", "taxid": 457502, 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"total_fragments": 2009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira hankyongi", "strain": "strain=NY-02", "accession": "GCA_003570885.1", "taxid": 2315688, "species_taxid": 2315688, "relation_to_type": "type", "validated": true, "ani": 77.2839, "matched_fragments": 200, "total_fragments": 2009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax caeni", "strain": "strain=R-24608", "accession": "GCA_900116825.1", "taxid": 343013, "species_taxid": 343013, "relation_to_type": "type", "validated": true, "ani": 77.2807, "matched_fragments": 184, "total_fragments": 2009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 77.255, "matched_fragments": 220, "total_fragments": 2009, "ani_threshold": 95, "status": "below_threshold" 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"strain=EF01-2", "accession": "GCA_000015565.1", "taxid": 364317, "species_taxid": 364317, "relation_to_type": "type", "validated": true, "ani": 77.153, "matched_fragments": 187, "total_fragments": 2009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia oryzae", "strain": "strain=KADR8-3", "accession": "GCA_003008535.1", "taxid": 2109914, "species_taxid": 2109914, "relation_to_type": "type", "validated": true, "ani": 77.0939, "matched_fragments": 179, "total_fragments": 2009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Extensimonas perlucida", "strain": "strain=HX2-24", "accession": "GCA_007655255.1", "taxid": 2590786, "species_taxid": 2590786, "relation_to_type": "type", "validated": true, "ani": 76.9816, "matched_fragments": 188, "total_fragments": 2009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Extensimonas vulgaris", "strain": "strain=DSM 100911", "accession": "GCA_003337425.1", "taxid": 1031594, "species_taxid": 1031594, "relation_to_type": "type", "validated": true, "ani": 76.9262, "matched_fragments": 173, "total_fragments": 2009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia testudinis", "strain": "strain=27C", "accession": "GCA_017498525.1", "taxid": 2816950, "species_taxid": 2816950, "relation_to_type": "type", "validated": true, "ani": 76.8874, "matched_fragments": 189, "total_fragments": 2009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Extensimonas vulgaris", "strain": "strain=CGMCC 1.10977", "accession": "GCA_007830535.1", "taxid": 1031594, "species_taxid": 1031594, "relation_to_type": "type", "validated": true, "ani": 76.8872, "matched_fragments": 176, "total_fragments": 2009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas fluminis", "strain": "strain=CJ34", "accession": "GCA_019186805.1", "taxid": 2796366, "species_taxid": 2796366, "relation_to_type": "type", 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