{
    "type": "genome",
    "identifier": "GCA_016710175.1",
    "organism": "Ignavibacteriales bacterium",
    "title": "Ignavibacteriales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Aalborg University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_016710175.1",
        "bioproject": "PRJNA629478",
        "biosample": "SAMN16425854",
        "wgs_master": "JADJLK000000000.1",
        "refseq_category": "na",
        "taxid": "2049428",
        "species_taxid": "2049428",
        "organism_name": "Ignavibacteriales bacterium",
        "infraspecific_name": "",
        "isolate": "EsbE_18-Q3-R3-47_MAXAC.197",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/19",
        "asm_name": "ASM1671017v1",
        "submitter": "Aalborg University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/710/175/GCA_016710175.1_ASM1671017v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-19",
    "dateModified": "2021-01-19",
    "datePublished": "2021-01-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ignavibacteriales bacterium"
        ],
        "sample_taxid": [
            "2049428"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Denmark: Esbjerg E"
        ],
        "sample_host_location_id": [],
        "data_size": "1.314 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4716480",
        "Number of Sequences": "28",
        "Longest Sequences (bp)": "3156335",
        "N50 (bp)": "3156335",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.3",
        "Number of CDSs": "4477",
        "Average Protein Length": "308.6",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016709155.1",
                "gtdb_species": "s__JADJEI01 sp016709155",
                "ani": 96.75,
                "matched_fragments": 1142,
                "total_fragments": 1558,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__JADJEI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.75",
                "min_intra_species_ani": "96.75",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016707585.1",
                "gtdb_species": "s__IGN3 sp016707585",
                "ani": 78.6706,
                "matched_fragments": 217,
                "total_fragments": 1558,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__IGN3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003538625.1",
                "gtdb_species": "s__IGN3 sp003538625",
                "ani": 77.8969,
                "matched_fragments": 212,
                "total_fragments": 1558,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__IGN3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016709765.1",
                "gtdb_species": "s__IGN3 sp016709765",
                "ani": 77.5721,
                "matched_fragments": 193,
                "total_fragments": 1558,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__IGN3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018059515.1",
                "gtdb_species": "s__IGN3 sp018059515",
                "ani": 77.5672,
                "matched_fragments": 167,
                "total_fragments": 1558,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__IGN3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018335755.1",
                "gtdb_species": "s__JAGXRK01 sp018335755",
                "ani": 76.947,
                "matched_fragments": 120,
                "total_fragments": 1558,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__JAGXRK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002050295.1",
                "gtdb_species": "s__IGN3 sp002050295",
                "ani": 76.5843,
                "matched_fragments": 158,
                "total_fragments": 1558,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__IGN3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.89",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001802865.1",
                "gtdb_species": "s__RBG-16-34-14 sp001802865",
                "ani": 75.917,
                "matched_fragments": 85,
                "total_fragments": 1558,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__RBG-16-34-14",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003142915.1",
                "gtdb_species": "s__FEN-1297 sp003142915",
                "ani": 75.7421,
                "matched_fragments": 52,
                "total_fragments": 1558,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__FEN-1297",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003599415.1",
                "gtdb_species": "s__SURF-24 sp003599415",
                "ani": 75.3046,
                "matched_fragments": 64,
                "total_fragments": 1558,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__SURF-24;g__SURF-24",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.664,
        "cell_length": 0.628,
        "doubling_h": null,
        "growth_tmp": 45.0,
        "optimum_tmp": 45.0,
        "optimum_ph": 7.167,
        "genome_size": 3658997.75,
        "gc_content": 33.9,
        "coding_genes": 3129.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 45.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Ignavibacteria",
        "o__Ignavibacteriales",
        "f__Ignavibacteriaceae",
        "g__JADJEI01",
        "s__JADJEI01 sp016709155"
    ],
    "_genome_taxon": [
        "Ignavibacteriales",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Ignavibacteria",
        "o__Ignavibacteriales",
        "f__Ignavibacteriaceae",
        "g__JADJEI01",
        "s__JADJEI01 sp016709155",
        "Bacteria",
        "Bacteroidota",
        "Ignavibacteria",
        "Ignavibacteriales",
        "Ignavibacteriaceae",
        "JADJEI01",
        "JADJEI01",
        "sp016709155"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}