{ "type": "genome", "identifier": "GCA_016715255.1", "organism": "Sphingomonadales bacterium", "title": "Sphingomonadales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Aalborg University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_016715255.1", "bioproject": "PRJNA629478", "biosample": "SAMN16426290", "wgs_master": "JADKAR000000000.1", "refseq_category": "na", "taxid": "1978525", "species_taxid": "1978525", "organism_name": "Sphingomonadales bacterium", "infraspecific_name": "", "isolate": "Mari_18-Q3-R65-66_BATAC.299", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/19", "asm_name": "ASM1671525v1", "submitter": "Aalborg University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/715/255/GCA_016715255.1_ASM1671525v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-19", "dateModified": "2021-01-19", "datePublished": "2021-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonadales bacterium" ], "sample_taxid": [ "1978525" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark: Mariagerfjord" ], "sample_host_location_id": [], "data_size": "0.906 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.44, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3208793", "Number of Sequences": "24", "Longest Sequences (bp)": "642909", "N50 (bp)": "286642", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.3", "Number of CDSs": "3326", "Average Protein Length": "287.0", "Coding Ratio (%)": "89.2", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aquisediminimonas profunda", "strain": "strain=DS48-3", "accession": "GCA_019443285.1", "taxid": 1550733, "species_taxid": 1550733, "relation_to_type": "type", "validated": true, "ani": 87.2796, "matched_fragments": 692, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas changnyeongensis", "strain": "strain=C33", "accession": "GCA_009913435.1", "taxid": 2698679, "species_taxid": 2698679, "relation_to_type": "type", "validated": true, "ani": 77.6235, "matched_fragments": 166, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium wenxiniae", "strain": "strain=JZ-1", "accession": "GCA_014205735.1", "taxid": 595605, "species_taxid": 595605, "relation_to_type": "type", "validated": true, "ani": 77.5306, "matched_fragments": 152, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas gilva", "strain": "strain=ZDH117", "accession": "GCA_003515075.1", "taxid": 2305907, "species_taxid": 2305907, "relation_to_type": "type", "validated": true, "ani": 77.3817, "matched_fragments": 157, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinithalassobacter tenebrarum", "strain": "strain=zrk23", "accession": "GCA_011057975.1", "taxid": 2711215, "species_taxid": 2711215, "relation_to_type": "type", "validated": true, "ani": 77.3358, "matched_fragments": 153, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas colocasiae", "strain": "strain=JCM 31229", "accession": "GCA_019880585.1", "taxid": 1848973, "species_taxid": 1848973, "relation_to_type": "type", "validated": true, "ani": 77.3232, "matched_fragments": 195, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium kunmingense", "strain": "strain=CGMCC 1.12274", "accession": "GCA_002813245.1", "taxid": 1211806, "species_taxid": 1211806, "relation_to_type": "type", "validated": true, "ani": 77.2953, "matched_fragments": 117, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinicella ginsenosidimutans", "strain": "strain=BS-11", "accession": "GCA_007995055.1", "taxid": 1176539, "species_taxid": 1176539, "relation_to_type": "type", "validated": true, "ani": 77.2803, "matched_fragments": 134, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas pokkalii", "strain": "strain=L3B27", "accession": "GCA_003096275.1", "taxid": 2175090, "species_taxid": 2175090, "relation_to_type": "type", "validated": true, "ani": 77.2635, "matched_fragments": 151, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas gei", "strain": "strain=ZFGT-11", "accession": "GCA_004792685.1", "taxid": 1395960, "species_taxid": 1395960, "relation_to_type": "type", "validated": true, "ani": 77.2492, "matched_fragments": 134, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella amylolytica", "strain": "strain=NS1", "accession": "GCA_003626915.1", "taxid": 2338327, "species_taxid": 2338327, "relation_to_type": "type", "validated": true, "ani": 77.2095, "matched_fragments": 94, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas jejuensis", "strain": "strain=DSM 27651", "accession": "GCA_011927695.1", "taxid": 904715, "species_taxid": 904715, "relation_to_type": "type", "validated": true, "ani": 77.1915, "matched_fragments": 109, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisediminimonas sediminicola", "strain": "strain=CH68-4", "accession": "GCA_019740335.1", "taxid": 2676787, "species_taxid": 2676787, "relation_to_type": "type", "validated": true, "ani": 77.152, "matched_fragments": 128, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas spermidinifaciens", "strain": "strain=9NM-10", "accession": "GCA_002351485.1", "taxid": 1141889, "species_taxid": 1141889, "relation_to_type": "type", "validated": true, "ani": 77.1467, "matched_fragments": 124, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizorhabdus phycosphaerae", "strain": "strain=MK52", "accession": "GCA_011044255.1", "taxid": 2711156, "species_taxid": 2711156, "relation_to_type": "type", "validated": true, "ani": 77.0855, "matched_fragments": 144, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinicella humi", "strain": "strain=QZX222", "accession": "GCA_003129465.1", "taxid": 2068657, "species_taxid": 2068657, "relation_to_type": "type", "validated": true, "ani": 77.0516, "matched_fragments": 129, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hengshuiensis", "strain": "strain=WHSC-8", "accession": "GCA_000935025.1", "taxid": 1609977, "species_taxid": 1609977, "relation_to_type": "type", "validated": true, "ani": 77.0468, "matched_fragments": 169, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas morindae", "strain": "strain=NBD5", "accession": "GCA_023822065.1", "taxid": 1541170, "species_taxid": 1541170, "relation_to_type": "type", "validated": true, "ani": 77.0272, "matched_fragments": 131, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aquimarinum", "strain": "strain=M24A2M", "accession": "GCA_009746585.1", "taxid": 2682494, "species_taxid": 2682494, "relation_to_type": "type", "validated": true, "ani": 77.0214, "matched_fragments": 112, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium jiangsuense", "strain": "strain=DSM 26189", "accession": "GCA_014196495.1", "taxid": 870476, "species_taxid": 870476, "relation_to_type": "type", "validated": true, "ani": 77.0196, "matched_fragments": 174, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas pituitosa", "strain": "strain=NBRC 102491", "accession": "GCA_001598435.1", "taxid": 99597, "species_taxid": 99597, "relation_to_type": "type", "validated": true, "ani": 76.8879, "matched_fragments": 143, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas paeninsulae", "strain": "strain=YZ-8", "accession": "GCA_003660165.1", "taxid": 2319844, "species_taxid": 2319844, "relation_to_type": "type", "validated": true, "ani": 76.7859, "matched_fragments": 107, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.44, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_016704425.1", "gtdb_species": "s__Chakrabartia sp016704425", "ani": 99.5257, "matched_fragments": 994, "total_fragments": 1059, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Chakrabartia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "97.63", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCA_005518185.1", "gtdb_species": "s__Chakrabartia 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77.5042, "matched_fragments": 159, "total_fragments": 1059, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001724715.1", "gtdb_species": "s__SCN-67-18 sp001724715", "ani": 77.5033, "matched_fragments": 169, "total_fragments": 1059, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__SCN-67-18", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003355005.1", "gtdb_species": "s__Sphingomonas sp003355005", "ani": 77.4931, 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1059, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "97.47", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001468225.1", "gtdb_species": "s__Sphingopyxis sp001468225", "ani": 77.3555, "matched_fragments": 169, "total_fragments": 1059, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_011057975.1", "gtdb_species": "s__Sphingomonas sp011057975", "ani": 77.3358, "matched_fragments": 153, "total_fragments": 1059, 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