{ "type": "genome", "identifier": "GCA_016721015.1", "organism": "Xanthomonadales bacterium", "title": "Xanthomonadales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Aalborg University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_016721015.1", "bioproject": "PRJNA629478", "biosample": "SAMN16426524", "wgs_master": "JADKJL000000000.1", "refseq_category": "na", "taxid": "2006849", "species_taxid": "2006849", "organism_name": "Xanthomonadales bacterium", "infraspecific_name": "", "isolate": "Vibo_18-Q3-R45-57_BAT3C.98", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/19", "asm_name": "ASM1672101v1", "submitter": "Aalborg University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/721/015/GCA_016721015.1_ASM1672101v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-19", "dateModified": "2021-01-19", "datePublished": "2021-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Xanthomonadales bacterium" ], "sample_taxid": [ "2006849" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark: Viborg" ], "sample_host_location_id": [], "data_size": "1.210 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4378333", "Number of Sequences": "13", "Longest Sequences (bp)": "1151960", "N50 (bp)": "600694", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.5", "Number of CDSs": "3740", "Average Protein Length": "340.0", "Coding Ratio (%)": "87.1", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dokdonella immobilis", "strain": "strain=CGMCC 1.7659", "accession": "GCA_900115085.1", "taxid": 578942, "species_taxid": 578942, "relation_to_type": "type", "validated": true, "ani": 80.478, "matched_fragments": 754, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella koreensis", "strain": "strain=DS-123", "accession": "GCA_001632775.1", "taxid": 323415, "species_taxid": 323415, "relation_to_type": "type", "validated": true, "ani": 78.1786, "matched_fragments": 388, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella fugitiva", "strain": "strain=A3", "accession": "GCA_004342425.1", "taxid": 328517, "species_taxid": 328517, "relation_to_type": "type", "validated": true, "ani": 77.6534, "matched_fragments": 381, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rudaea cellulosilytica", "strain": "strain=DSM 22992", "accession": "GCA_000378125.1", "taxid": 540746, "species_taxid": 540746, "relation_to_type": "type", "validated": true, "ani": 77.6369, "matched_fragments": 270, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas cucumeris", "strain": "strain=CGMCC 1.10821", "accession": "GCA_007830035.1", "taxid": 985012, "species_taxid": 985012, "relation_to_type": "type", "validated": true, "ani": 77.6008, "matched_fragments": 232, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tahibacter caeni", "strain": "strain=BUT-6", "accession": "GCA_024609805.1", "taxid": 1453545, "species_taxid": 1453545, "relation_to_type": "type", "validated": true, "ani": 77.5884, "matched_fragments": 344, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 77.5018, "matched_fragments": 220, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas translucens", "strain": "strain=ATCC 19319", "accession": "GCA_020880735.1", "taxid": 343, "species_taxid": 343, "relation_to_type": "type", "validated": true, "ani": 77.4892, "matched_fragments": 209, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oleiagrimonas citrea", "strain": "strain=MEBiC09124", "accession": "GCA_012395255.1", "taxid": 1665687, "species_taxid": 1665687, "relation_to_type": "type", "validated": true, "ani": 77.3672, "matched_fragments": 216, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria flava", "strain": "strain=MAH-13", "accession": "GCA_017837635.1", "taxid": 2821489, "species_taxid": 2821489, "relation_to_type": "type", "validated": true, "ani": 77.3551, "matched_fragments": 230, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 77.3259, "matched_fragments": 182, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 77.3182, "matched_fragments": 235, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter fulvus", "strain": "strain=Jip2", "accession": "GCA_000264315.1", "taxid": 219571, "species_taxid": 219571, "relation_to_type": "type", "validated": true, "ani": 77.3003, "matched_fragments": 225, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter spathiphylli", "strain": "strain=B39", "accession": "GCA_000264295.1", "taxid": 347483, "species_taxid": 347483, "relation_to_type": "type", "validated": true, "ani": 77.2926, "matched_fragments": 256, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella japonica", "strain": "strain=DSM 16301", "accession": "GCA_001010355.1", "taxid": 231455, "species_taxid": 231455, "relation_to_type": "type", "validated": true, "ani": 77.2469, "matched_fragments": 189, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella acidiphila", "strain": "strain=7MK23", "accession": "GCA_014863405.1", "taxid": 2775866, "species_taxid": 2775866, "relation_to_type": "type", "validated": true, "ani": 77.2444, "matched_fragments": 228, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter rhizovicinus", "strain": "strain=LJ96", "accession": "GCA_001887595.1", "taxid": 242606, "species_taxid": 242606, "relation_to_type": "type", "validated": true, "ani": 77.2218, "matched_fragments": 203, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas sacchari", "strain": "strain=CFBP4641", "accession": "GCA_002940085.1", "taxid": 56458, "species_taxid": 56458, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1691, "matched_fragments": 232, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter anthropi", "strain": "strain=CCUG 25036", "accession": "GCA_011759365.1", "taxid": 564369, "species_taxid": 564369, "relation_to_type": "type", "validated": true, "ani": 76.9219, "matched_fragments": 188, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium purpuratum", "strain": "strain=984", "accession": "GCA_000224005.3", "taxid": 37487, "species_taxid": 37487, "relation_to_type": "type", "validated": true, "ani": 76.4113, "matched_fragments": 81, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus montanus", "strain": "strain=DSM 21226", "accession": "GCA_013410775.1", "taxid": 522889, "species_taxid": 522889, "relation_to_type": "type", "validated": true, "ani": 76.1921, "matched_fragments": 77, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Immundisolibacter cernigliae", "strain": "strain=TR3.2", "accession": 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"N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.355, "cell_length": 0.227, "doubling_h": 0.355, "growth_tmp": 29.562, "optimum_tmp": 29.59, "optimum_ph": 7.131, "genome_size": 4164088.144, "gc_content": 65.291, "coding_genes": 3964.768, "rRNA16S_genes": 2.188, "tRNA_genes": 55.224, "gram_stain": 0.007, "sporulation": 0.0, "motility": 0.612, "range_salinity": 0.25, "facultative_respiration": 0.044, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.955, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.98, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.009, "vibrio_cell_shape": 0.009, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Xanthomonadales", "f__Rhodanobacteraceae", "g__Dokdonella", "s__Dokdonella sp016721015" ], "_genome_taxon": [ 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