{ "type": "genome", "identifier": "GCA_016721165.1", "organism": "Moraxellaceae bacterium", "title": "Moraxellaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Aalborg University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_016721165.1", "bioproject": "PRJNA629478", "biosample": "SAMN16426518", "wgs_master": "JADKJF000000000.1", "refseq_category": "na", "taxid": "1889775", "species_taxid": "1889775", "organism_name": "Moraxellaceae bacterium", "infraspecific_name": "", "isolate": "Vibo_18-Q3-R45-57_BAT3C.142", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/19", "asm_name": "ASM1672116v1", "submitter": "Aalborg University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/721/165/GCA_016721165.1_ASM1672116v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-19", "dateModified": "2021-01-19", "datePublished": "2021-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Moraxellaceae bacterium" ], "sample_taxid": [ "1889775" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark: Viborg" ], "sample_host_location_id": [], "data_size": "0.863 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.79, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3065421", "Number of Sequences": "26", "Longest Sequences (bp)": "412926", "N50 (bp)": "173943", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.0", "Number of CDSs": "3058", "Average Protein Length": "287.8", "Coding Ratio (%)": "86.1", "Number of rRNAs": "9", "Number of tRNAs": "40", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Agitococcus lubricus", "strain": "strain=DSM 5822", "accession": "GCA_003051055.1", "taxid": 1077255, "species_taxid": 1077255, "relation_to_type": "type", "validated": true, "ani": 78.5125, "matched_fragments": 364, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter towneri", "strain": "strain=CIP 107472", "accession": "GCA_000368785.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 76.5379, "matched_fragments": 52, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.79, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002333125.1", "gtdb_species": "s__Agitococcus sp002333125", "ani": 97.1752, "matched_fragments": 603, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Agitococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.59", "min_intra_species_ani": "97.28", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.78", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_006546595.1", "gtdb_species": "s__Agitococcus sp006546595", "ani": 80.1827, "matched_fragments": 415, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Agitococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003051055.1", "gtdb_species": "s__Agitococcus lubricus", "ani": 78.5281, "matched_fragments": 362, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Agitococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.051, "cell_length": 0.127, "doubling_h": 0.093, "growth_tmp": 29.424, "optimum_tmp": 29.078, "optimum_ph": 7.171, "genome_size": 3280080.518, "gc_content": 41.172, "coding_genes": 2982.799, "rRNA16S_genes": 5.671, "tRNA_genes": 67.27, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.05, "range_salinity": 0.666, "facultative_respiration": 0.019, "anaerobic_respiration": 0.009, "aerobic_respiration": 0.97, "mesophilic_range_tmp": 0.894, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.105, "bacillus_cell_shape": 0.472, "coccus_cell_shape": 0.236, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.29, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Moraxellaceae", "g__Agitococcus", "s__Agitococcus sp002333125" ], "_genome_taxon": [ "Moraxellaceae", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Moraxellaceae", "g__Agitococcus", "s__Agitococcus sp002333125", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Pseudomonadales", "Moraxellaceae", "Agitococcus", "Agitococcus", "sp002333125" ], "_meo": [ { "id": "MEO_0000014", "label": "activated sludge" } ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }