{
    "type": "genome",
    "identifier": "GCA_016721685.1",
    "organism": "Flavobacteriales bacterium",
    "title": "Flavobacteriales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Aalborg University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_016721685.1",
        "bioproject": "PRJNA629478",
        "biosample": "SAMN16426475",
        "wgs_master": "JADKHP000000000.1",
        "refseq_category": "na",
        "taxid": "2021391",
        "species_taxid": "2021391",
        "organism_name": "Flavobacteriales bacterium",
        "infraspecific_name": "",
        "isolate": "Skiv_18-Q3-R9-52_BAT3C.511",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/19",
        "asm_name": "ASM1672168v1",
        "submitter": "Aalborg University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/721/685/GCA_016721685.1_ASM1672168v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-19",
    "dateModified": "2021-01-19",
    "datePublished": "2021-01-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Flavobacteriales bacterium"
        ],
        "sample_taxid": [
            "2021391"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Denmark: Skive"
        ],
        "sample_host_location_id": [],
        "data_size": "1.188 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4188713",
        "Number of Sequences": "56",
        "Longest Sequences (bp)": "307497",
        "N50 (bp)": "132099",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.6",
        "Number of CDSs": "3937",
        "Average Protein Length": "308.2",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
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                "accession": "GCA_016717225.1",
                "gtdb_species": "s__PHOS-HE28 sp016717225",
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                "matched_fragments": 1172,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.49",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016721005.1",
                "gtdb_species": "s__PHOS-HE28 sp016721005",
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                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016721825.1",
                "gtdb_species": "s__PHOS-HE28 sp016721825",
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                "matched_fragments": 299,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "99.00",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016715895.1",
                "gtdb_species": "s__PHOS-HE28 sp016715895",
                "ani": 78.5609,
                "matched_fragments": 242,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017998165.1",
                "gtdb_species": "s__PHOS-HE28 sp017998165",
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                "matched_fragments": 305,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002482775.1",
                "gtdb_species": "s__PHOS-HE28 sp002482775",
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                "matched_fragments": 268,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016699575.1",
                "gtdb_species": "s__PHOS-HE28 sp016699575",
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                "matched_fragments": 283,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016787995.1",
                "gtdb_species": "s__PHOS-HE28 sp016787995",
                "ani": 78.2797,
                "matched_fragments": 162,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017987895.1",
                "gtdb_species": "s__PHOS-HE28 sp017987895",
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                "matched_fragments": 253,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.66",
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                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013360395.1",
                "gtdb_species": "s__PHOS-HE28 sp013360395",
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                "matched_fragments": 216,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.56",
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                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
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            },
            {
                "accession": "GCA_018267055.1",
                "gtdb_species": "s__PHOS-HE28 sp018267055",
                "ani": 78.0271,
                "matched_fragments": 267,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016700415.1",
                "gtdb_species": "s__PHOS-HE28 sp002396605",
                "ani": 77.9358,
                "matched_fragments": 217,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28",
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                "min_intra_species_ani": "99.43",
                "mean_intra_species_af": "0.98",
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                "status": "-"
            },
            {
                "accession": "GCA_018267065.1",
                "gtdb_species": "s__PHOS-HE28 sp018267065",
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                "matched_fragments": 154,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
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            {
                "accession": "GCA_016719225.1",
                "gtdb_species": "s__PHOS-HE28 sp016719225",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28",
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            },
            {
                "accession": "GCA_018267155.1",
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            {
                "accession": "GCA_016710685.1",
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                "mean_intra_species_ani": "98.90",
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            {
                "accession": "GCA_018266475.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.337,
        "cell_length": 0.308,
        "doubling_h": 1.285,
        "growth_tmp": 26.455,
        "optimum_tmp": 26.685,
        "optimum_ph": 7.271,
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        "gc_content": 35.517,
        "coding_genes": 2961.142,
        "rRNA16S_genes": 3.684,
        "tRNA_genes": 48.763,
        "gram_stain": 0.0,
        "sporulation": 0.007,
        "motility": 0.372,
        "range_salinity": 0.615,
        "facultative_respiration": 0.042,
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        "mesophilic_range_tmp": 0.898,
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        "bacillus_cell_shape": 0.982,
        "coccus_cell_shape": 0.005,
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        "coccobacillus_cell_shape": 0.01,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Flavobacteriales",
        "f__PHOS-HE28",
        "g__PHOS-HE28",
        "s__PHOS-HE28 sp016717225"
    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Flavobacteriales",
        "f__PHOS-HE28",
        "g__PHOS-HE28",
        "s__PHOS-HE28 sp016717225",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Flavobacteriales",
        "PHOS-HE28",
        "PHOS-HE28",
        "PHOS-HE28",
        "sp016717225"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}