{ "type": "genome", "identifier": "GCA_016722385.1", "organism": "Rhodanobacteraceae bacterium", "title": "Rhodanobacteraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Aalborg University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_016722385.1", "bioproject": "PRJNA629478", "biosample": "SAMN16426437", "wgs_master": "JADKGG000000000.1", "refseq_category": "na", "taxid": "2052182", "species_taxid": "2052182", "organism_name": "Rhodanobacteraceae bacterium", "infraspecific_name": "", "isolate": "Ribe_18-Q3-R11-54_BATAC.537", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/19", "asm_name": "ASM1672238v1", "submitter": "Aalborg University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/722/385/GCA_016722385.1_ASM1672238v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-19", "dateModified": "2021-01-19", "datePublished": "2021-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodanobacteraceae bacterium" ], "sample_taxid": [ "2052182" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark: Ribe" ], "sample_host_location_id": [], "data_size": "0.981 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 90.74, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3588864", "Number of Sequences": "28", "Longest Sequences (bp)": "501233", "N50 (bp)": "210078", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.2", "Number of CDSs": "3345", "Average Protein Length": "325.9", "Coding Ratio (%)": "91.1", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter terrestris", "strain": "strain=II4", "accession": "GCA_014489475.1", "taxid": 2865112, "species_taxid": 2865112, "relation_to_type": "type", "validated": true, "ani": 78.3197, "matched_fragments": 310, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tahibacter caeni", "strain": "strain=BUT-6", "accession": "GCA_024609805.1", "taxid": 1453545, "species_taxid": 1453545, "relation_to_type": "type", "validated": true, "ani": 78.1309, "matched_fragments": 354, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas mephitis", "strain": "strain=DSM 12574", "accession": "GCA_000422305.1", "taxid": 83615, "species_taxid": 83615, "relation_to_type": "type", "validated": true, "ani": 78.0611, "matched_fragments": 287, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas colneyensis", "strain": "strain=Sa2BVA3", "accession": "GCA_014836665.1", "taxid": 2762230, "species_taxid": 2762230, "relation_to_type": "type", "validated": true, "ani": 78.0449, "matched_fragments": 289, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas marina", "strain": "strain=FR1330", "accession": "GCA_007859325.1", "taxid": 488485, "species_taxid": 488485, "relation_to_type": "type", "validated": true, "ani": 78.0337, "matched_fragments": 319, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas weifangensis", "strain": "strain=WF-2", "accession": "GCA_003416885.1", "taxid": 2303539, "species_taxid": 2303539, "relation_to_type": "type", "validated": true, "ani": 78.0194, "matched_fragments": 264, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aestuarii", "strain": "strain=B9", "accession": "GCA_004357985.1", "taxid": 453837, "species_taxid": 453837, "relation_to_type": "type", "validated": true, "ani": 77.997, "matched_fragments": 254, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 77.989, "matched_fragments": 288, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas gilva", "strain": "strain=H23", "accession": "GCA_005239095.1", "taxid": 2572684, "species_taxid": 2572684, "relation_to_type": "type", "validated": true, "ani": 77.9814, "matched_fragments": 264, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas kalamensis", "strain": "strain=DSM 18571", "accession": "GCA_010211745.1", "taxid": 289483, "species_taxid": 289483, "relation_to_type": "type", "validated": true, "ani": 77.9586, "matched_fragments": 254, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rudaea cellulosilytica", "strain": "strain=DSM 22992", "accession": "GCA_000378125.1", "taxid": 540746, "species_taxid": 540746, "relation_to_type": "type", "validated": true, "ani": 77.91, "matched_fragments": 248, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella japonica", "strain": "strain=DSM 16301", "accession": "GCA_001010355.1", "taxid": 231455, "species_taxid": 231455, "relation_to_type": "type", "validated": true, "ani": 77.897, "matched_fragments": 180, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella fugitiva", "strain": "strain=A3", "accession": "GCA_004342425.1", "taxid": 328517, "species_taxid": 328517, "relation_to_type": "type", "validated": true, "ani": 77.8781, "matched_fragments": 329, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas indica", "strain": "strain=PPL560", "accession": "GCA_022669045.1", "taxid": 2912242, "species_taxid": 2912242, "relation_to_type": "type", "validated": true, "ani": 77.8514, "matched_fragments": 295, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas sacchari", "strain": "strain=CFBP4641", "accession": "GCA_002940085.1", "taxid": 56458, "species_taxid": 56458, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8469, "matched_fragments": 289, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas translucens", "strain": "strain=ATCC 19319", "accession": "GCA_020880735.1", "taxid": 343, "species_taxid": 343, "relation_to_type": "type", "validated": true, "ani": 77.8307, "matched_fragments": 264, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria terrea", "strain": "strain=CGMCC 1.7053", "accession": "GCA_900115705.1", "taxid": 529704, "species_taxid": 529704, "relation_to_type": "type", "validated": true, "ani": 77.8164, "matched_fragments": 242, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria terrea", "strain": "strain=DSM 26515", "accession": "GCA_900109025.1", "taxid": 529704, "species_taxid": 529704, "relation_to_type": "type", "validated": true, "ani": 77.7947, "matched_fragments": 242, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella koreensis", "strain": "strain=DS-123", "accession": "GCA_001632775.1", "taxid": 323415, "species_taxid": 323415, "relation_to_type": "type", "validated": true, "ani": 77.7738, "matched_fragments": 323, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas terrae", "strain": "strain=THG-MD21", "accession": "GCA_004358165.1", "taxid": 1530191, "species_taxid": 1530191, "relation_to_type": "type", "validated": true, "ani": 77.7512, "matched_fragments": 281, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter spathiphylli", "strain": "strain=B39", "accession": "GCA_000264295.1", "taxid": 347483, "species_taxid": 347483, "relation_to_type": "type", "validated": true, "ani": 77.7464, "matched_fragments": 256, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter yeojuensis", "strain": "strain=DSM 17673", "accession": "GCA_011742875.1", "taxid": 345309, "species_taxid": 345309, "relation_to_type": "type", "validated": true, "ani": 77.711, "matched_fragments": 204, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella amyloliquefaciens", "strain": "strain=DHC06", "accession": "GCA_004296575.1", "taxid": 1770545, "species_taxid": 1770545, "relation_to_type": "type", "validated": true, "ani": 77.66, "matched_fragments": 221, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria flava", "strain": "strain=MAH-13", "accession": "GCA_017837635.1", "taxid": 2821489, "species_taxid": 2821489, "relation_to_type": "type", "validated": true, "ani": 77.6356, "matched_fragments": 256, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pennii", "strain": "strain=Sa5BUN4", "accession": "GCA_014836545.1", "taxid": 2762239, "species_taxid": 2762239, "relation_to_type": "type", "validated": true, "ani": 77.6116, "matched_fragments": 199, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas winnipegensis", "strain": "strain=NML 130738", "accession": "GCA_004283755.1", "taxid": 2480810, "species_taxid": 2480810, "relation_to_type": "type", "validated": true, "ani": 77.5466, "matched_fragments": 270, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter segetis", "strain": "strain=17J68-2", "accession": "GCA_004359965.1", "taxid": 2492394, "species_taxid": 2492394, "relation_to_type": "type", "validated": true, "ani": 77.5341, "matched_fragments": 263, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella solisilvae", "strain": "strain=DHG54", "accession": "GCA_003351225.1", "taxid": 1920168, "species_taxid": 1920168, "relation_to_type": "type", "validated": true, "ani": 77.5288, "matched_fragments": 238, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ahniella affigens", "strain": "strain=D13", "accession": "GCA_003015185.1", "taxid": 2021234, "species_taxid": 2021234, "relation_to_type": "type", "validated": true, "ani": 77.5017, "matched_fragments": 215, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter anthropi", "strain": "strain=CCUG 25036", "accession": "GCA_011759365.1", "taxid": 564369, "species_taxid": 564369, "relation_to_type": "type", "validated": true, "ani": 77.4136, "matched_fragments": 187, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tahibacter aquaticus", "strain": "strain=DSM 21667", "accession": "GCA_004363655.1", "taxid": 520092, "species_taxid": 520092, "relation_to_type": "type", "validated": true, "ani": 77.4, "matched_fragments": 349, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudomonas] hibiscicola", "strain": "strain=ATCC 19867", "accession": "GCA_000382065.1", "taxid": 86189, "species_taxid": 86189, "relation_to_type": "type", "validated": true, "ani": 77.3485, "matched_fragments": 241, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 90.74, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016721845.1", "gtdb_species": "s__JADKHK01 sp016721845", "ani": 98.8969, "matched_fragments": 1116, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Ahniellaceae;g__JADKHK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_016182785.1", "gtdb_species": "s__JADKHK01 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"matched_fragments": 755, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Ahniellaceae;g__JADKHK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000953855.2", "gtdb_species": "s__Mizugakiibacter sediminis", "ani": 78.1643, "matched_fragments": 322, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Mizugakiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016712105.1", "gtdb_species": "s__Ahniella sp016712105", "ani": 78.1579, "matched_fragments": 268, 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004143945.1", "gtdb_species": "s__Dokdonella_A sp004143945", "ani": 78.0235, "matched_fragments": 289, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017997455.1", "gtdb_species": "s__JAGOEZ01 sp017997455", "ani": 78.0051, "matched_fragments": 254, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Ahniellaceae;g__JAGOEZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.60", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.77", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002483055.1", "gtdb_species": "s__Dokdonella sp002483055", "ani": 77.9667, "matched_fragments": 282, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009996615.1", "gtdb_species": "s__Dokdonella_A sp009996615", "ani": 77.9168, "matched_fragments": 355, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014843005.1", "gtdb_species": "s__Rhodanobacter sp014843005", "ani": 77.9061, "matched_fragments": 214, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Rhodanobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002297645.1", "gtdb_species": "s__Dokdonella_A sp002297645", "ani": 77.8624, "matched_fragments": 279, "total_fragments": 1186, "gtdb_taxonomy": 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