{ "type": "genome", "identifier": "GCA_016764475.1", "organism": "Amylibacter sp.", "title": "Amylibacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Southern California", "publication": [ {} ], "properties": { "assembly_accession": "GCA_016764475.1", "bioproject": "PRJNA391950", "biosample": "SAMN17309522", "wgs_master": "JAESRV000000000.1", "refseq_category": "na", "taxid": "1872504", "species_taxid": "1872504", "organism_name": "Amylibacter sp.", "infraspecific_name": "", "isolate": "NORP268", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/27", "asm_name": "ASM1676447v1", "submitter": "University of Southern California", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/764/475/GCA_016764475.1_ASM1676447v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-27", "dateModified": "2021-01-27", "datePublished": "2021-01-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Amylibacter sp." ], "sample_taxid": [ "1872504" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean: North Pond" ], "sample_host_location_id": [], "data_size": "0.879 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 12.88, "strain_heterogeneity": 25.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3044766", "Number of Sequences": "145", "Longest Sequences (bp)": "91041", "N50 (bp)": "28890", "Gap Ratio (%)": "0.003284", "GCcontent (%)": "50.2", "Number of CDSs": "2959", "Average Protein Length": "297.1", "Coding Ratio (%)": "86.6", "Number of rRNAs": "1", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amylibacter kogurei", "strain": "strain=4G11", "accession": "GCA_002742285.1", "taxid": 1889778, "species_taxid": 1889778, "relation_to_type": "type", "validated": true, "ani": 76.7261, "matched_fragments": 124, "total_fragments": 944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amylibacter ulvae", "strain": "strain=KCTC 32465", "accession": "GCA_014652655.1", "taxid": 1651968, "species_taxid": 1651968, "relation_to_type": "type", "validated": true, "ani": 76.6003, "matched_fragments": 120, "total_fragments": 944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia marina", "strain": "strain=DSM 26895", "accession": "GCA_900112745.1", "taxid": 321267, 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"validated": true, "ani": 75.9975, "matched_fragments": 56, "total_fragments": 944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Primorskyibacter marinus", "strain": "strain=PX7", "accession": "GCA_003313245.1", "taxid": 1977320, "species_taxid": 1977320, "relation_to_type": "type", "validated": true, "ani": 75.9668, "matched_fragments": 51, "total_fragments": 944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia sediminis", "strain": "strain=ZQ172", "accession": "GCA_003990645.1", "taxid": 2497945, "species_taxid": 2497945, "relation_to_type": "type", "validated": true, "ani": 75.9566, "matched_fragments": 59, "total_fragments": 944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 75.8474, "matched_fragments": 73, "total_fragments": 944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseinatronobacter thiooxidans", "strain": "strain=DSM 13087", "accession": "GCA_003254005.1", "taxid": 121821, "species_taxid": 121821, "relation_to_type": "type", "validated": true, "ani": 75.8351, "matched_fragments": 54, "total_fragments": 944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 75.829, "matched_fragments": 74, "total_fragments": 944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter delicatus", "strain": "strain=DSM 16477", "accession": "GCA_900102535.1", "taxid": 218672, "species_taxid": 218672, "relation_to_type": "type", "validated": true, "ani": 75.7868, "matched_fragments": 59, "total_fragments": 944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseinatronobacter thiooxidans", "strain": "strain=ALG1", "accession": "GCA_001870675.1", "taxid": 121821, "species_taxid": 121821, "relation_to_type": "type", "validated": true, "ani": 75.777, "matched_fragments": 55, "total_fragments": 944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 75.713, "matched_fragments": 52, "total_fragments": 944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius zhejiangensis", "strain": "strain=KCTC 42443", "accession": "GCA_014656375.1", "taxid": 1632025, "species_taxid": 1632025, "relation_to_type": "type", "validated": true, "ani": 75.6889, "matched_fragments": 71, "total_fragments": 944, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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