{
    "type": "genome",
    "identifier": "GCA_016777545.1",
    "organism": "Candidatus Pelagibacter bacterium",
    "title": "Candidatus Pelagibacter bacterium",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Evolutionary Genomics Group",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_016777545.1",
        "bioproject": "PRJNA638805",
        "biosample": "SAMN16436194",
        "wgs_master": "JADHRH000000000.1",
        "refseq_category": "na",
        "taxid": "2780116",
        "species_taxid": "2780116",
        "organism_name": "Candidatus Pelagibacter bacterium",
        "infraspecific_name": "",
        "isolate": "BS30m-G18",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/01",
        "asm_name": "ASM1677754v1",
        "submitter": "Evolutionary Genomics Group",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/777/545/GCA_016777545.1_ASM1677754v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-01",
    "dateModified": "2021-02-01",
    "datePublished": "2021-02-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Pelagibacter bacterium"
        ],
        "sample_taxid": [
            "2780116"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Bulgaria: Black Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.193 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 72.69,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "696797",
        "Number of Sequences": "68",
        "Longest Sequences (bp)": "28043",
        "N50 (bp)": "10643",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "29.5",
        "Number of CDSs": "696",
        "Average Protein Length": "284.4",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "16",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Candidatus Pelagibacter ubique",
                "strain": "strain=HTCC1062",
                "accession": "GCA_000012345.1",
                "taxid": 198252,
                "species_taxid": 198252,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 89.0515,
                "matched_fragments": 167,
                "total_fragments": 197,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 72.69,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016777545.1",
                "gtdb_species": "s__Pelagibacter sp016777545",
                "ani": 100.0,
                "matched_fragments": 189,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016778675.1",
                "gtdb_species": "s__Pelagibacter sp016778675",
                "ani": 94.356,
                "matched_fragments": 127,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.28",
                "min_intra_species_ani": "96.11",
                "mean_intra_species_af": "0.71",
                "min_intra_species_af": "0.65",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000012345.1",
                "gtdb_species": "s__Pelagibacter ubique",
                "ani": 89.0515,
                "matched_fragments": 167,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "97.32",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_012276695.1",
                "gtdb_species": "s__Pelagibacter giovannonii",
                "ani": 85.8547,
                "matched_fragments": 168,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905618915.1",
                "gtdb_species": "s__Pelagibacter sp905618915",
                "ani": 85.2342,
                "matched_fragments": 97,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905616395.1",
                "gtdb_species": "s__Pelagibacter sp905616395",
                "ani": 84.8215,
                "matched_fragments": 135,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.02",
                "min_intra_species_ani": "95.02",
                "mean_intra_species_af": "0.70",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905618905.1",
                "gtdb_species": "s__Pelagibacter sp905618905",
                "ani": 84.5515,
                "matched_fragments": 92,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013204495.1",
                "gtdb_species": "s__Pelagibacter sp013204495",
                "ani": 83.6182,
                "matched_fragments": 118,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905612465.1",
                "gtdb_species": "s__Pelagibacter sp905612465",
                "ani": 82.2961,
                "matched_fragments": 84,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905618805.1",
                "gtdb_species": "s__Pelagibacter sp905618805",
                "ani": 81.1763,
                "matched_fragments": 73,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Pelagibacterales",
        "f__Pelagibacteraceae",
        "g__Pelagibacter",
        "s__Pelagibacter sp016777545"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Pelagibacter",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Pelagibacterales",
        "f__Pelagibacteraceae",
        "g__Pelagibacter",
        "s__Pelagibacter sp016777545",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Pelagibacterales",
        "Pelagibacteraceae",
        "Pelagibacter",
        "Pelagibacter",
        "sp016777545"
    ],
    "_meo": [
        {
            "id": "MEO_0000087",
            "label": "estuary"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}