{ "type": "genome", "identifier": "GCA_016781855.1", "organism": "Rubrobacter sp.", "title": "Rubrobacter sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "University of Duisburg-Essen", "publication": [ {} ], "properties": { "assembly_accession": "GCA_016781855.1", "bioproject": "PRJNA665391", "biosample": "SAMN16295074", "wgs_master": "JADDPO000000000.1", "refseq_category": "na", "taxid": "2036010", "species_taxid": "2036010", "organism_name": "Rubrobacter sp.", "infraspecific_name": "", "isolate": "MB4_3", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/01", "asm_name": "ASM1678185v1", "submitter": "University of Duisburg-Essen", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/781/855/GCA_016781855.1_ASM1678185v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-01", "dateModified": "2021-02-01", "datePublished": "2021-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Rubrobacter sp." ], "sample_taxid": [ "2036010" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile: Maria Elena, Atacama Desert" ], "sample_host_location_id": [], "data_size": "0.771 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 90.16, "contamination": 1.85, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2708973", "Number of Sequences": "825", "Longest Sequences (bp)": "29690", "N50 (bp)": "4620", "Gap Ratio (%)": "0.496092", "GCcontent (%)": "66.2", "Number of CDSs": "2111", "Average Protein Length": "264.6", "Coding Ratio (%)": "61.9", "Number of rRNAs": "1", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rubrobacter tropicus", "strain": "strain=SCSIO 52909", "accession": "GCA_011492945.1", "taxid": 2653851, "species_taxid": 2653851, "relation_to_type": "type", "validated": true, "ani": 79.8926, "matched_fragments": 303, "total_fragments": 491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrobacter marinus", "strain": "strain=SCSIO 52915", "accession": "GCA_011492965.1", "taxid": 2653852, "species_taxid": 2653852, "relation_to_type": "type", "validated": true, "ani": 78.9058, "matched_fragments": 245, "total_fragments": 491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrobacter radiotolerans", "strain": "strain=DSM 5868", "accession": "GCA_900175965.1", "taxid": 42256, "species_taxid": 42256, "relation_to_type": "type", "validated": true, "ani": 77.4013, "matched_fragments": 155, "total_fragments": 491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrobacter aplysinae", "strain": "strain=RV113", "accession": "GCA_001029505.1", "taxid": 909625, "species_taxid": 909625, "relation_to_type": "type", "validated": true, "ani": 77.2933, "matched_fragments": 148, "total_fragments": 491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrobacter indicoceani", "strain": "strain=SCSIO 08198", "accession": "GCA_003568865.1", "taxid": 2051957, "species_taxid": 2051957, "relation_to_type": "type", "validated": true, "ani": 77.2506, "matched_fragments": 106, "total_fragments": 491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter arvalis", "strain": "strain=DSM 23288", "accession": "GCA_014199525.1", "taxid": 912552, "species_taxid": 912552, "relation_to_type": "type", "validated": true, "ani": 75.2779, "matched_fragments": 59, "total_fragments": 491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes philippinensis", "strain": "strain=NBRC 13878", "accession": "GCA_016862335.1", "taxid": 35752, "species_taxid": 35752, "relation_to_type": "type", "validated": true, "ani": 74.8482, "matched_fragments": 55, "total_fragments": 491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis eburnea", "strain": "strain=GLM-1", "accession": "GCA_003937945.1", "taxid": 2267691, "species_taxid": 2267691, "relation_to_type": "type", "validated": true, "ani": 74.8414, "matched_fragments": 51, "total_fragments": 491, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 90.16, "contamination": 1.85, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_016781725.1", "gtdb_species": "s__SCSIO-52909 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491, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Rubrobacteria;o__Rubrobacterales;f__Rubrobacteraceae;g__SCSIO-52909", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013815575.1", "gtdb_species": "s__SCSIO-52909 sp013815575", "ani": 79.9156, "matched_fragments": 191, "total_fragments": 491, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Rubrobacteria;o__Rubrobacterales;f__Rubrobacteraceae;g__SCSIO-52909", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.69", "min_intra_species_ani": "97.69", "mean_intra_species_af": "0.64", "min_intra_species_af": "0.64", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011492945.1", "gtdb_species": "s__SCSIO-52909 sp011492945", "ani": 79.8926, "matched_fragments": 303, "total_fragments": 491, "gtdb_taxonomy": 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