{
    "type": "genome",
    "identifier": "GCA_016868645.1",
    "organism": "Bacteroidota bacterium",
    "title": "Bacteroidota bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Wisconsin - Madison",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_016868645.1",
        "bioproject": "PRJNA523022",
        "biosample": "SAMN10966411",
        "wgs_master": "VGFY00000000.1",
        "refseq_category": "na",
        "taxid": "1898104",
        "species_taxid": "1898104",
        "organism_name": "Bacteroidota bacterium",
        "infraspecific_name": "",
        "isolate": "M_surface_10_m2_196",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/11",
        "asm_name": "JGI 2017-08-21",
        "submitter": "University of Wisconsin - Madison",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/868/645/GCA_016868645.1_JGI_2017-08-21",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-11",
    "dateModified": "2021-02-11",
    "datePublished": "2021-02-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroidota bacterium"
        ],
        "sample_taxid": [
            "1898104"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Tanzania: Lake Tanganyika, Mahale"
        ],
        "sample_host_location_id": [],
        "data_size": "0.496 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 62.79,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1711764",
        "Number of Sequences": "486",
        "Longest Sequences (bp)": "19937",
        "N50 (bp)": "3732",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.9",
        "Number of CDSs": "1115",
        "Average Protein Length": "288.8",
        "Coding Ratio (%)": "56.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "16",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            },
            {
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                "species_taxid": 1442587,
                "relation_to_type": "type",
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            {
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                "accession": "GCA_017254835.1",
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                "species_taxid": 1852016,
                "relation_to_type": "type",
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            },
            {
                "organism_name": "Algoriphagus alkaliphilus",
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                "accession": "GCA_900103735.1",
                "taxid": 279824,
                "species_taxid": 279824,
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            {
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                "accession": "GCA_003259255.1",
                "taxid": 2202829,
                "species_taxid": 2202829,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
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                "organism_name": "Algoriphagus lacus",
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                "accession": "GCA_003583985.1",
                "taxid": 2056311,
                "species_taxid": 2056311,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Algoriphagus mannitolivorans",
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                "accession": "GCA_000429425.1",
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                "species_taxid": 226504,
                "relation_to_type": "type",
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                "status": "below_threshold"
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        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCA_903952135.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
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                "mean_intra_species_af": "0.91",
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                "num_clustered_genomes": 2,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            {
                "accession": "GCA_016866385.1",
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            },
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                "accession": "GCF_014324365.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
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            },
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            },
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                "num_clustered_genomes": 1,
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            }
        ]
    },
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        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
        "f__Cyclobacteriaceae",
        "g__Algoriphagus",
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    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
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        "Bacteroidota",
        "Bacteroidia",
        "Cytophagales",
        "Cyclobacteriaceae",
        "Algoriphagus",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}