{ "type": "genome", "identifier": "GCA_016871855.1", "organism": "Gemmatimonadota bacterium", "title": "Gemmatimonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Wisconsin - Madison", "publication": [ {} ], "properties": { "assembly_accession": "GCA_016871855.1", "bioproject": "PRJNA523022", "biosample": "SAMN10966977", "wgs_master": "VHBQ00000000.1", "refseq_category": "na", "taxid": "2026742", "species_taxid": "2026742", "organism_name": "Gemmatimonadota bacterium", "infraspecific_name": "", "isolate": "M_DeepCast_65m_m1_262", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/11", "asm_name": "JGI 2017-08-21", "submitter": "University of Wisconsin - Madison", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/871/855/GCA_016871855.1_JGI_2017-08-21", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-11", "dateModified": "2021-02-11", "datePublished": "2021-02-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Gemmatimonadota bacterium" ], "sample_taxid": [ "2026742" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania: Lake Tanganyika, Mahale" ], "sample_host_location_id": [], "data_size": "0.821 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2986908", "Number of Sequences": "159", "Longest Sequences (bp)": "155751", "N50 (bp)": "41325", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.6", "Number of CDSs": "2536", "Average Protein Length": "336.4", "Coding Ratio (%)": "85.7", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gemmatirosa kalamazoonensis", "strain": "strain=KBS708", "accession": "GCA_000522985.1", "taxid": 861299, "species_taxid": 861299, "relation_to_type": "type", "validated": true, "ani": 76.9038, "matched_fragments": 345, "total_fragments": 907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatimonas aurantiaca", "strain": "strain=T-27", "accession": "GCA_000010305.1", "taxid": 173480, "species_taxid": 173480, "relation_to_type": "type", "validated": true, "ani": 76.8522, "matched_fragments": 125, "total_fragments": 907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatimonas phototrophica", "strain": "strain=AP64", "accession": "GCA_000695095.2", "taxid": 1379270, "species_taxid": 1379270, "relation_to_type": "type", "validated": true, "ani": 76.814, "matched_fragments": 91, "total_fragments": 907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatimonas groenlandica", "strain": "strain=TET16", "accession": "GCA_013004105.1", "taxid": 2732249, "species_taxid": 2732249, "relation_to_type": "type", "validated": true, "ani": 76.5057, "matched_fragments": 132, "total_fragments": 907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=CB-286315", "accession": "GCA_013000925.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.8633, "matched_fragments": 129, "total_fragments": 907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=CECT 8660", "accession": "GCA_014198875.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.6992, "matched_fragments": 131, "total_fragments": 907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=DSM 29007", "accession": "GCA_014202995.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.6735, "matched_fragments": 130, "total_fragments": 907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella guodeyinii", "strain": "strain=HF-1101", "accession": "GCA_009834925.2", "taxid": 2690837, "species_taxid": 2690837, "relation_to_type": "type", "validated": true, "ani": 75.0898, "matched_fragments": 61, "total_fragments": 907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": 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