{
    "type": "genome",
    "identifier": "GCA_017307655.1",
    "organism": "Chlamydiales bacterium",
    "title": "Chlamydiales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield Lab (University of California Berkeley)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017307655.1",
        "bioproject": "PRJNA629336",
        "biosample": "SAMN18061357",
        "wgs_master": "JAFKGS000000000.1",
        "refseq_category": "na",
        "taxid": "2047757",
        "species_taxid": "2047757",
        "organism_name": "Chlamydiales bacterium",
        "infraspecific_name": "",
        "isolate": "SCN18_25_1_16_R1_B_38_15",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/08",
        "asm_name": "ASM1730765v1",
        "submitter": "Jill Banfield Lab (University of California Berkeley)",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/307/655/GCA_017307655.1_ASM1730765v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-08",
    "dateModified": "2021-03-08",
    "datePublished": "2021-03-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chlamydiales bacterium"
        ],
        "sample_taxid": [
            "2047757"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Africa: Capetown"
        ],
        "sample_host_location_id": [],
        "data_size": "0.808 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2842364",
        "Number of Sequences": "10",
        "Longest Sequences (bp)": "673313",
        "N50 (bp)": "362152",
        "Gap Ratio (%)": "0.001935",
        "GCcontent (%)": "38.1",
        "Number of CDSs": "2376",
        "Average Protein Length": "347.3",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001897225.1",
                "gtdb_species": "s__Neochlamydia sp001897225",
                "ani": 99.9983,
                "matched_fragments": 934,
                "total_fragments": 943,
                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Parachlamydiaceae;g__Neochlamydia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000648235.2",
                "gtdb_species": "s__Neochlamydia sp000813665",
                "ani": 77.4249,
                "matched_fragments": 90,
                "total_fragments": 943,
                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Parachlamydiaceae;g__Neochlamydia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.45",
                "min_intra_species_ani": "96.44",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_011087585.1",
                "gtdb_species": "s__Neochlamydia sp011087585",
                "ani": 77.364,
                "matched_fragments": 81,
                "total_fragments": 943,
                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Parachlamydiaceae;g__Neochlamydia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_013414685.1",
                "gtdb_species": "s__SSA5 sp013414685",
                "ani": 76.9101,
                "matched_fragments": 86,
                "total_fragments": 943,
                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Parachlamydiaceae;g__SSA5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 0.311,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.984,
        "optimum_ph": null,
        "genome_size": 1285375.56,
        "gc_content": 39.523,
        "coding_genes": 952.339,
        "rRNA16S_genes": 1.305,
        "tRNA_genes": 37.8,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.875,
        "coccus_cell_shape": 0.125,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Chlamydiota",
        "c__Chlamydiia",
        "o__Chlamydiales",
        "f__Parachlamydiaceae",
        "g__Neochlamydia",
        "s__Neochlamydia sp001897225"
    ],
    "_genome_taxon": [
        "Chlamydiales",
        "bacterium",
        "d__Bacteria",
        "p__Chlamydiota",
        "c__Chlamydiia",
        "o__Chlamydiales",
        "f__Parachlamydiaceae",
        "g__Neochlamydia",
        "s__Neochlamydia sp001897225",
        "Bacteria",
        "Chlamydiota",
        "Chlamydiia",
        "Chlamydiales",
        "Parachlamydiaceae",
        "Neochlamydia",
        "Neochlamydia",
        "sp001897225"
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        },
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}