{ "type": "genome", "identifier": "GCA_017307665.1", "organism": "Chryseobacterium sp.", "title": "Chryseobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield Lab (University of California Berkeley)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_017307665.1", "bioproject": "PRJNA629336", "biosample": "SAMN18061360", "wgs_master": "JAFKGV000000000.1", "refseq_category": "na", "taxid": "1871047", "species_taxid": "1871047", "organism_name": "Chryseobacterium sp.", "infraspecific_name": "", "isolate": "SCN18_14_9_16_R1_B_40_24", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/08", "asm_name": "ASM1730766v1", "submitter": "Jill Banfield Lab (University of California Berkeley)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/307/665/GCA_017307665.1_ASM1730766v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-08", "dateModified": "2021-03-08", "datePublished": "2021-03-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium sp." ], "sample_taxid": [ "1871047" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa: Capetown" ], "sample_host_location_id": [], "data_size": "0.861 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3048146", "Number of Sequences": "15", "Longest Sequences (bp)": "832146", "N50 (bp)": "430522", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.6", "Number of CDSs": "2696", "Average Protein Length": "333.8", "Coding Ratio (%)": "88.6", "Number of rRNAs": "4", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium koreense", "strain": "strain=CCUG 49689", "accession": "GCA_001045435.1", "taxid": 232216, "species_taxid": 232216, "relation_to_type": "type", "validated": true, "ani": 78.4684, "matched_fragments": 278, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium koreense", "strain": "strain=DSM 25209", "accession": "GCA_014201785.1", "taxid": 232216, "species_taxid": 232216, "relation_to_type": "type", "validated": true, "ani": 78.3786, "matched_fragments": 277, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium nakagawai", "strain": "strain=NCTC13529", "accession": "GCA_900637665.1", "taxid": 1241982, "species_taxid": 1241982, "relation_to_type": "type", "validated": true, "ani": 78.3608, "matched_fragments": 144, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_020985365.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.9147, "matched_fragments": 210, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_019195395.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.8444, "matched_fragments": 208, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium taichungense", "strain": "strain=DSM 17453", "accession": "GCA_900109935.1", "taxid": 295069, "species_taxid": 295069, "relation_to_type": "type", "validated": true, "ani": 77.8215, "matched_fragments": 155, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium phocaeense", "strain": "strain=6021061333", "accession": "GCA_900169075.1", "taxid": 1816690, "species_taxid": 1816690, "relation_to_type": "type", "validated": true, "ani": 77.5967, "matched_fragments": 129, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella chaponensis", "strain": "strain=DSM 23145", "accession": "GCA_900156725.1", "taxid": 713588, "species_taxid": 713588, "relation_to_type": "type", "validated": true, "ani": 77.5688, "matched_fragments": 199, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella daneshvariae", "strain": 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77.1438, "matched_fragments": 67, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella jeonii", "strain": "strain=DSM 17048", "accession": "GCA_900112115.1", "taxid": 266749, "species_taxid": 266749, "relation_to_type": "type", "validated": true, "ani": 77.1315, "matched_fragments": 198, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium polytrichastri", "strain": "strain=DSM 26899", "accession": "GCA_900142445.1", "taxid": 1302687, "species_taxid": 1302687, "relation_to_type": "type", "validated": true, "ani": 77.0656, "matched_fragments": 120, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001898255.1", "gtdb_species": "s__Kaistella sp001898255", "ani": 99.9449, "matched_fragments": 985, "total_fragments": 1009, 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