{ "type": "genome", "identifier": "GCA_017308595.1", "organism": "Afipia sp.", "title": "Afipia sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield Lab (University of California Berkeley)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_017308595.1", "bioproject": "PRJNA629336", "biosample": "SAMN18061304", "wgs_master": "JAFKER000000000.1", "refseq_category": "na", "taxid": "1871052", "species_taxid": "1871052", "organism_name": "Afipia sp.", "infraspecific_name": "", "isolate": "SCN18_30_10_14_R1_B_60_16", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/08", "asm_name": "ASM1730859v1", "submitter": "Jill Banfield Lab (University of California Berkeley)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/308/595/GCA_017308595.1_ASM1730859v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-08", "dateModified": "2021-03-08", "datePublished": "2021-03-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Afipia sp." ], "sample_taxid": [ "1871052" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa: Capetown" ], "sample_host_location_id": [], "data_size": "1.295 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.93, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4609494", "Number of Sequences": "29", "Longest Sequences (bp)": "1070147", "N50 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79.3316, "matched_fragments": 642, "total_fragments": 1523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium septentrionale", "strain": "strain=1S1", "accession": "GCA_011516645.4", "taxid": 1404411, "species_taxid": 1404411, "relation_to_type": "type", "validated": true, "ani": 79.282, "matched_fragments": 674, "total_fragments": 1523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium lablabi", "strain": "strain=CCBAU 23086", "accession": "GCA_001440475.1", "taxid": 722472, "species_taxid": 722472, "relation_to_type": "suspected-type", "validated": true, "ani": 79.276, "matched_fragments": 672, "total_fragments": 1523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium macuxiense", "strain": "strain=BR 10303", "accession": "GCA_001542415.1", "taxid": 1755647, "species_taxid": 1755647, "relation_to_type": "type", "validated": true, "ani": 79.1469, "matched_fragments": 674, 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