{ "type": "genome", "identifier": "GCA_017391065.1", "organism": "Oscillospiraceae bacterium", "title": "Oscillospiraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_017391065.1", "bioproject": "PRJNA657473", "biosample": "SAMN16341295", "wgs_master": "JAFOZU000000000.1", "refseq_category": "na", "taxid": "2485925", "species_taxid": "2485925", "organism_name": "Oscillospiraceae bacterium", "infraspecific_name": "", "isolate": "RGIG948", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/18", "asm_name": "ASM1739106v1", "submitter": "Nanjing Agricultural University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/391/065/GCA_017391065.1_ASM1739106v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-18", "dateModified": "2021-03-18", "datePublished": "2021-03-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Oscillospiraceae bacterium" ], "sample_taxid": [ "2485925" ], "sample_host_organism": [ "dairy cattle" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "0.675 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 72.27, "contamination": 19.57, "strain_heterogeneity": 26.92, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2385277", "Number of Sequences": "538", "Longest Sequences (bp)": "33963", "N50 (bp)": "6181", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.4", "Number of CDSs": "1552", "Average Protein Length": "310.6", "Coding Ratio (%)": "60.6", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 72.27, "contamination": 19.57, "strain_heterogeneity": 26.92 }, "gtdb_result": [ { "accession": "GCA_017378975.1", "gtdb_species": "s__Faecousia sp017378975", "ani": 98.159, "matched_fragments": 360, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_017456045.1", "gtdb_species": "s__Faecousia sp017456045", "ani": 81.7504, "matched_fragments": 237, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017457285.1", "gtdb_species": "s__Faecousia sp017457285", "ani": 79.6511, "matched_fragments": 151, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015067605.1", "gtdb_species": "s__Faecousia sp015067605", "ani": 79.3426, "matched_fragments": 162, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.22", "min_intra_species_ani": "98.22", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017456645.1", "gtdb_species": "s__Faecousia sp017456645", "ani": 79.2429, "matched_fragments": 104, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017501695.1", "gtdb_species": "s__Faecousia sp017501695", "ani": 79.0256, "matched_fragments": 134, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017465745.1", "gtdb_species": "s__Faecousia sp017465745", "ani": 78.8868, "matched_fragments": 161, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017461445.1", "gtdb_species": "s__Faecousia sp017461445", "ani": 78.6539, "matched_fragments": 164, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004562395.1", "gtdb_species": "s__Faecousia sp004562395", "ani": 78.6352, "matched_fragments": 124, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017622295.1", "gtdb_species": "s__Faecousia sp017622295", "ani": 78.6246, "matched_fragments": 127, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015067615.1", "gtdb_species": "s__Faecousia sp015067615", "ani": 78.584, "matched_fragments": 151, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017507425.1", "gtdb_species": "s__Faecousia sp017507425", "ani": 78.4345, "matched_fragments": 140, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900546075.1", "gtdb_species": "s__Faecousia sp900546075", "ani": 78.2523, "matched_fragments": 108, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.06", "min_intra_species_ani": "96.74", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.78", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_000434635.1", "gtdb_species": "s__Faecousia sp000434635", "ani": 77.9168, "matched_fragments": 113, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.30", "min_intra_species_ani": "97.16", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_017473455.1", "gtdb_species": "s__Faecousia sp017473455", "ani": 77.7881, "matched_fragments": 116, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Faecousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900770295.1", "gtdb_species": "s__Dysosmobacter sp900770295", "ani": 76.7811, "matched_fragments": 58, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017435425.1", "gtdb_species": "s__Evtepia sp017435425", "ani": 76.6583, "matched_fragments": 58, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Evtepia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.49", "min_intra_species_ani": "98.49", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.397, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 30.0, "optimum_ph": 6.25, "genome_size": 4470621.5, "gc_content": 49.895, "coding_genes": 4347.333, "rRNA16S_genes": 3.0, "tRNA_genes": 61.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Oscillospiraceae", "g__Faecousia", "s__Faecousia sp017378975" ], "_genome_taxon": [ "Oscillospiraceae", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Oscillospiraceae", "g__Faecousia", "s__Faecousia sp017378975", "Bacteria", "Bacillota", "A", "Clostridia", "Oscillospirales", "Oscillospiraceae", "Faecousia", "Faecousia", "sp017378975" ], "_meo": [ { "id": "MEO_0000046", "label": "rumen" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }