{
    "type": "genome",
    "identifier": "GCA_017392005.1",
    "organism": "Rikenellaceae bacterium",
    "title": "Rikenellaceae bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017392005.1",
        "bioproject": "PRJNA657473",
        "biosample": "SAMN16341215",
        "wgs_master": "JAFOWS000000000.1",
        "refseq_category": "na",
        "taxid": "2049048",
        "species_taxid": "2049048",
        "organism_name": "Rikenellaceae bacterium",
        "infraspecific_name": "",
        "isolate": "RGIG868",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/18",
        "asm_name": "ASM1739200v1",
        "submitter": "Nanjing Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/392/005/GCA_017392005.1_ASM1739200v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-18",
    "dateModified": "2021-03-18",
    "datePublished": "2021-03-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rikenellaceae bacterium"
        ],
        "sample_taxid": [
            "2049048"
        ],
        "sample_host_organism": [
            "dairy cattle"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "0.431 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 0.46,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1493861",
        "Number of Sequences": "481",
        "Longest Sequences (bp)": "44989",
        "N50 (bp)": "3326",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.8",
        "Number of CDSs": "903",
        "Average Protein Length": "288.7",
        "Coding Ratio (%)": "52.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Alistipes senegalensis",
                "strain": "strain=FDAARGOS_1578",
                "accession": "GCA_020735725.1",
                "taxid": 1288121,
                "species_taxid": 1288121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4592,
                "matched_fragments": 53,
                "total_fragments": 221,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes senegalensis",
                "strain": "strain=JC50",
                "accession": "GCA_000312145.1",
                "taxid": 1288121,
                "species_taxid": 1288121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4015,
                "matched_fragments": 51,
                "total_fragments": 221,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes senegalensis",
                "strain": "strain=JC50",
                "accession": "GCA_025145645.1",
                "taxid": 1288121,
                "species_taxid": 1288121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2864,
                "matched_fragments": 55,
                "total_fragments": 221,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes provencensis",
                "strain": "strain=Marseille-P2431",
                "accession": "GCA_900083545.1",
                "taxid": 1816676,
                "species_taxid": 1816676,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2047,
                "matched_fragments": 51,
                "total_fragments": 221,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 0.46,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900770585.1",
                "gtdb_species": "s__Alistipes sp900770585",
                "ani": 95.7157,
                "matched_fragments": 149,
                "total_fragments": 221,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.00",
                "min_intra_species_ani": "96.66",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900769405.1",
                "gtdb_species": "s__Alistipes sp900769405",
                "ani": 89.5785,
                "matched_fragments": 188,
                "total_fragments": 221,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "97.81",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017442365.1",
                "gtdb_species": "s__Alistipes sp017442365",
                "ani": 89.1645,
                "matched_fragments": 191,
                "total_fragments": 221,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.53",
                "min_intra_species_ani": "97.42",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_017463585.1",
                "gtdb_species": "s__Alistipes sp017463585",
                "ani": 88.9575,
                "matched_fragments": 197,
                "total_fragments": 221,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.67",
                "min_intra_species_ani": "96.64",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_017379895.1",
                "gtdb_species": "s__Alistipes sp017379895",
                "ani": 86.9559,
                "matched_fragments": 176,
                "total_fragments": 221,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017425655.1",
                "gtdb_species": "s__Alistipes sp017425655",
                "ani": 86.0175,
                "matched_fragments": 179,
                "total_fragments": 221,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900550925.1",
                "gtdb_species": "s__Alistipes sp900550925",
                "ani": 77.7939,
                "matched_fragments": 60,
                "total_fragments": 221,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.6,
        "cell_length": -0.098,
        "doubling_h": null,
        "growth_tmp": 35.714,
        "optimum_tmp": 39.571,
        "optimum_ph": 7.0,
        "genome_size": 3089903.768,
        "gc_content": 53.851,
        "coding_genes": 2830.888,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 43.5,
        "gram_stain": 0.142,
        "sporulation": 0.0,
        "motility": 0.142,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.75,
        "thermophilic_range_tmp": 0.25,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.857,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.142,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Rikenellaceae",
        "g__Alistipes",
        "s__Alistipes sp900770585"
    ],
    "_genome_taxon": [
        "Rikenellaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Rikenellaceae",
        "g__Alistipes",
        "s__Alistipes sp900770585",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Rikenellaceae",
        "Alistipes",
        "Alistipes",
        "sp900770585"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}