{
    "type": "genome",
    "identifier": "GCA_017396965.1",
    "organism": "Clostridia bacterium",
    "title": "Clostridia bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017396965.1",
        "bioproject": "PRJNA657473",
        "biosample": "SAMN16342269",
        "wgs_master": "JAFQKL000000000.1",
        "refseq_category": "na",
        "taxid": "2044939",
        "species_taxid": "2044939",
        "organism_name": "Clostridia bacterium",
        "infraspecific_name": "",
        "isolate": "RGIG1901",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/18",
        "asm_name": "ASM1739696v1",
        "submitter": "Nanjing Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/396/965/GCA_017396965.1_ASM1739696v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-18",
    "dateModified": "2021-03-18",
    "datePublished": "2021-03-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridia bacterium"
        ],
        "sample_taxid": [
            "2044939"
        ],
        "sample_host_organism": [
            "goat"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "0.631 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 2.55,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2255509",
        "Number of Sequences": "408",
        "Longest Sequences (bp)": "41208",
        "N50 (bp)": "7126",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.4",
        "Number of CDSs": "1807",
        "Average Protein Length": "295.2",
        "Coding Ratio (%)": "70.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavonifractor plautii",
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                "accession": "GCA_010508875.1",
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                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
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                "status": "below_threshold"
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            {
                "organism_name": "Streptomyces varsoviensis",
                "strain": "strain=NRRL ISP-5346",
                "accession": "GCA_000718635.1",
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                "species_taxid": 67373,
                "relation_to_type": "type",
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                "total_fragments": 528,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces varsoviensis",
                "strain": "strain=NRRL B-3589",
                "accession": "GCA_000719255.1",
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                "species_taxid": 67373,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7303,
                "matched_fragments": 55,
                "total_fragments": 528,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces hydrogenans",
                "strain": "strain=JCM 4771",
                "accession": "GCA_014656075.1",
                "taxid": 1873719,
                "species_taxid": 1873719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6833,
                "matched_fragments": 67,
                "total_fragments": 528,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 2.55,
            "strain_heterogeneity": 50.0
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        "gtdb_result": [
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                "accession": "GCA_017396965.1",
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                "total_fragments": 528,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__BX7;g__Galloscillospira_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018714125.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__BX7;g__Galloscillospira_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017427525.1",
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                "total_fragments": 528,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.15",
                "min_intra_species_ani": "95.98",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_012719075.1",
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                "matched_fragments": 124,
                "total_fragments": 528,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__BX7;g__JAAYBB01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900626285.1",
                "gtdb_species": "s__Flavonifractor massiliensis_A",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018228705.1",
                "gtdb_species": "s__Dysosmobacter sp018228705",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_002161215.1",
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                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_016899775.1",
                "gtdb_species": "s__Lawsonibacter sp900545895",
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                "matched_fragments": 50,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Lawsonibacter",
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                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_000718635.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
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                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
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        "f__Feifaniaceae",
        "g__Galloscillospira_B",
        "s__Galloscillospira_B sp017396965"
    ],
    "_genome_taxon": [
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        "d__Bacteria",
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        "c__Clostridia",
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        "f__Feifaniaceae",
        "g__Galloscillospira_B",
        "s__Galloscillospira_B sp017396965",
        "Bacteria",
        "Bacillota",
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        "Clostridia",
        "Oscillospirales",
        "Feifaniaceae",
        "Galloscillospira",
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        "Galloscillospira",
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        "sp017396965"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}