{ "type": "genome", "identifier": "GCA_017410345.1", "organism": "Methanobrevibacter sp.", "title": "Methanobrevibacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_017410345.1", "bioproject": "PRJNA657473", "biosample": "SAMN16342538", "wgs_master": "JAFQQZ000000000.1", "refseq_category": "na", "taxid": "66852", "species_taxid": "66852", "organism_name": "Methanobrevibacter sp.", "infraspecific_name": "", "isolate": "RGIG2071", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/18", "asm_name": "ASM1741034v1", "submitter": "Nanjing Agricultural University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/410/345/GCA_017410345.1_ASM1741034v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-18", "dateModified": "2021-03-18", "datePublished": "2021-03-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanobrevibacter sp." ], "sample_taxid": [ "66852" ], "sample_host_organism": [ "goat" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "0.515 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1840861", "Number of Sequences": "63", "Longest Sequences (bp)": "154041", "N50 (bp)": "45330", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.2", "Number of CDSs": "1693", "Average Protein Length": "296.5", "Coding Ratio (%)": "81.8", "Number of rRNAs": "1", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanobrevibacter ruminantium", "strain": "strain=M1", "accession": "GCA_000024185.1", "taxid": 83816, "species_taxid": 83816, "relation_to_type": "type", "validated": true, "ani": 81.4545, "matched_fragments": 380, "total_fragments": 581, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter olleyae", "strain": "strain=DSM 16632", "accession": "GCA_900114585.1", "taxid": 294671, "species_taxid": 294671, "relation_to_type": "type", "validated": true, "ani": 81.3293, "matched_fragments": 376, "total_fragments": 581, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter filiformis", "strain": "strain=DSM 11501", "accession": "GCA_001639265.1", 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"o__Methanobacteriales", "f__Methanobacteriaceae", "g__Methanobrevibacter", "s__Methanobrevibacter sp017410345", "Archaea", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter", "sp017410345" ], "_meo": [ { "id": "MEO_0000046", "label": "rumen" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }