{
    "type": "genome",
    "identifier": "GCA_017430645.1",
    "organism": "Ruminococcus sp.",
    "title": "Ruminococcus sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017430645.1",
        "bioproject": "PRJNA657473",
        "biosample": "SAMN16343072",
        "wgs_master": "JAFRMN000000000.1",
        "refseq_category": "na",
        "taxid": "41978",
        "species_taxid": "41978",
        "organism_name": "Ruminococcus sp.",
        "infraspecific_name": "",
        "isolate": "RGIG2605",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/19",
        "asm_name": "ASM1743064v1",
        "submitter": "Nanjing Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/430/645/GCA_017430645.1_ASM1743064v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-19",
    "dateModified": "2021-03-19",
    "datePublished": "2021-03-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ruminococcus sp."
        ],
        "sample_taxid": [
            "41978"
        ],
        "sample_host_organism": [
            "goat"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "0.682 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 49.31,
        "contamination": 16.67,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2355168",
        "Number of Sequences": "849",
        "Longest Sequences (bp)": "7777",
        "N50 (bp)": "2969",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.2",
        "Number of CDSs": "1466",
        "Average Protein Length": "267.9",
        "Coding Ratio (%)": "50.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "15",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ruminococcus flavefaciens",
                "strain": "strain=ATCC 19208",
                "accession": "GCA_000518765.1",
                "taxid": 1265,
                "species_taxid": 1265,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.0988,
                "matched_fragments": 135,
                "total_fragments": 292,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 49.31,
            "contamination": 16.67,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_004554385.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_T",
                "ani": 94.1256,
                "matched_fragments": 165,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900119535.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_H",
                "ani": 89.7087,
                "matched_fragments": 162,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.32",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000526795.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_D",
                "ani": 83.7202,
                "matched_fragments": 158,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000621785.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_C",
                "ani": 81.796,
                "matched_fragments": 138,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900116855.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_R",
                "ani": 81.6638,
                "matched_fragments": 144,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "97.16",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_004556875.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_S",
                "ani": 81.4136,
                "matched_fragments": 93,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000518765.1",
                "gtdb_species": "s__Ruminococcus flavefaciens",
                "ani": 81.0982,
                "matched_fragments": 135,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017519145.1",
                "gtdb_species": "s__Ruminococcus sp017519145",
                "ani": 81.0657,
                "matched_fragments": 122,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.13",
                "min_intra_species_ani": "97.92",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000571935.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_F",
                "ani": 80.6336,
                "matched_fragments": 126,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_902780115.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_Y",
                "ani": 80.5608,
                "matched_fragments": 90,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001604035.1",
                "gtdb_species": "s__Ruminococcus sp001604035",
                "ani": 79.335,
                "matched_fragments": 70,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012718885.1",
                "gtdb_species": "s__Ruminococcus sp012718885",
                "ani": 79.2391,
                "matched_fragments": 84,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016303195.1",
                "gtdb_species": "s__Ruminococcus sp016303195",
                "ani": 78.8929,
                "matched_fragments": 62,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017543335.1",
                "gtdb_species": "s__Ruminococcus sp017543335",
                "ani": 78.8007,
                "matched_fragments": 59,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "98.36",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017441505.1",
                "gtdb_species": "s__Ruminococcus sp017441505",
                "ani": 78.6637,
                "matched_fragments": 69,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902796065.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_X",
                "ani": 77.5058,
                "matched_fragments": 59,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.18,
        "cell_length": -0.18,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.7,
        "optimum_ph": 7.0,
        "genome_size": 3334855.36,
        "gc_content": 43.875,
        "coding_genes": 2772.666,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 64.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Ruminococcus",
        "s__"
    ],
    "_genome_taxon": [
        "Ruminococcus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Ruminococcus",
        "s__",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Ruminococcaceae",
        "Ruminococcus",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 1,
    "quality_label": "\u2b50\ufe0f"
}