{
    "type": "genome",
    "identifier": "GCA_017449865.1",
    "organism": "Bacteroidaceae bacterium",
    "title": "Bacteroidaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017449865.1",
        "bioproject": "PRJNA657473",
        "biosample": "SAMN16344061",
        "wgs_master": "JAFSYR000000000.1",
        "refseq_category": "na",
        "taxid": "2212467",
        "species_taxid": "2212467",
        "organism_name": "Bacteroidaceae bacterium",
        "infraspecific_name": "",
        "isolate": "RGIG3594",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/19",
        "asm_name": "ASM1744986v1",
        "submitter": "Nanjing Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/449/865/GCA_017449865.1_ASM1744986v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-19",
    "dateModified": "2021-03-19",
    "datePublished": "2021-03-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroidaceae bacterium"
        ],
        "sample_taxid": [
            "2212467"
        ],
        "sample_host_organism": [
            "goat"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "0.715 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 66.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2481911",
        "Number of Sequences": "145",
        "Longest Sequences (bp)": "81248",
        "N50 (bp)": "29577",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.3",
        "Number of CDSs": "1947",
        "Average Protein Length": "363.3",
        "Coding Ratio (%)": "85.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bacteroides eggerthii",
                "strain": "strain=DSM 20697",
                "accession": "GCA_000155815.1",
                "taxid": 28111,
                "species_taxid": 28111,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5864,
                "matched_fragments": 50,
                "total_fragments": 756,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola plebeius",
                "strain": "strain=DSM 17135",
                "accession": "GCA_000187895.1",
                "taxid": 310297,
                "species_taxid": 310297,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.4402,
                "matched_fragments": 54,
                "total_fragments": 756,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides humanifaecis",
                "strain": "strain=KGMB07931",
                "accession": "GCA_017309675.2",
                "taxid": 2792859,
                "species_taxid": 2792859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3342,
                "matched_fragments": 62,
                "total_fragments": 756,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides fluxus",
                "strain": "strain=YIT 12057",
                "accession": "GCA_000195635.1",
                "taxid": 626930,
                "species_taxid": 626930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.147,
                "matched_fragments": 54,
                "total_fragments": 756,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides timonensis",
                "strain": "",
                "accession": "GCA_000513195.1",
                "taxid": 1470345,
                "species_taxid": 1470345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.935,
                "matched_fragments": 60,
                "total_fragments": 756,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides cellulosilyticus",
                "strain": "strain=DSM 14838",
                "accession": "GCA_000158035.1",
                "taxid": 246787,
                "species_taxid": 246787,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9091,
                "matched_fragments": 53,
                "total_fragments": 756,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides intestinalis",
                "strain": "strain=DSM 17393",
                "accession": "GCA_000172175.1",
                "taxid": 329854,
                "species_taxid": 329854,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8052,
                "matched_fragments": 53,
                "total_fragments": 756,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 66.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_017471185.1",
                "gtdb_species": "s__UBA2918 sp017471185",
                "ani": 97.9934,
                "matched_fragments": 615,
                "total_fragments": 756,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA2918",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "98.01",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902775375.1",
                "gtdb_species": "s__UBA2918 sp002349865",
                "ani": 80.0639,
                "matched_fragments": 275,
                "total_fragments": 756,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA2918",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.32",
                "min_intra_species_ani": "97.59",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_902779085.1",
                "gtdb_species": "s__UBA2918 sp902779085",
                "ani": 79.4358,
                "matched_fragments": 276,
                "total_fragments": 756,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA2918",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017442855.1",
                "gtdb_species": "s__UBA2918 sp017442855",
                "ani": 79.1882,
                "matched_fragments": 278,
                "total_fragments": 756,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA2918",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017534535.1",
                "gtdb_species": "s__UBA2918 sp017534535",
                "ani": 78.9989,
                "matched_fragments": 301,
                "total_fragments": 756,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA2918",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017649485.1",
                "gtdb_species": "s__UBA2918 sp017649485",
                "ani": 78.9648,
                "matched_fragments": 297,
                "total_fragments": 756,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA2918",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017651505.1",
                "gtdb_species": "s__UBA2918 sp017651505",
                "ani": 78.9525,
                "matched_fragments": 188,
                "total_fragments": 756,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA2918",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902783615.1",
                "gtdb_species": "s__UBA2918 sp902783615",
                "ani": 78.7005,
                "matched_fragments": 268,
                "total_fragments": 756,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA2918",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016284115.1",
                "gtdb_species": "s__UBA2918 sp016284115",
                "ani": 78.6876,
                "matched_fragments": 198,
                "total_fragments": 756,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA2918",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900313715.1",
                "gtdb_species": "s__UBA2918 sp900313715",
                "ani": 78.3643,
                "matched_fragments": 212,
                "total_fragments": 756,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA2918",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000195635.1",
                "gtdb_species": "s__Bacteroides fluxus",
                "ani": 76.147,
                "matched_fragments": 54,
                "total_fragments": 756,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.66",
                "min_intra_species_ani": "99.32",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_903181435.1",
                "gtdb_species": "s__Bacteroides sp900765785",
                "ani": 75.581,
                "matched_fragments": 50,
                "total_fragments": 756,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.28",
                "min_intra_species_ani": "97.12",
                "mean_intra_species_af": "0.65",
                "min_intra_species_af": "0.59",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.149,
        "cell_length": 0.21,
        "doubling_h": -0.095,
        "growth_tmp": 36.675,
        "optimum_tmp": 36.026,
        "optimum_ph": 6.997,
        "genome_size": 4766044.241,
        "gc_content": 43.414,
        "coding_genes": 3969.717,
        "rRNA16S_genes": 5.5,
        "tRNA_genes": 71.066,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__UBA2918",
        "s__UBA2918 sp017471185"
    ],
    "_genome_taxon": [
        "Bacteroidaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__UBA2918",
        "s__UBA2918 sp017471185",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "UBA2918",
        "UBA2918",
        "sp017471185"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}