{
    "type": "genome",
    "identifier": "GCA_017455765.1",
    "organism": "Selenomonadaceae bacterium",
    "title": "Selenomonadaceae bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017455765.1",
        "bioproject": "PRJNA657473",
        "biosample": "SAMN16344072",
        "wgs_master": "JAFSZC000000000.1",
        "refseq_category": "na",
        "taxid": "2652289",
        "species_taxid": "2652289",
        "organism_name": "Selenomonadaceae bacterium",
        "infraspecific_name": "",
        "isolate": "RGIG3605",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/19",
        "asm_name": "ASM1745576v1",
        "submitter": "Nanjing Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/455/765/GCA_017455765.1_ASM1745576v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-19",
    "dateModified": "2021-03-19",
    "datePublished": "2021-03-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Selenomonadaceae bacterium"
        ],
        "sample_taxid": [
            "2652289"
        ],
        "sample_host_organism": [
            "goat"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "0.315 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 55.9,
        "contamination": 6.25,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1111745",
        "Number of Sequences": "377",
        "Longest Sequences (bp)": "9516",
        "N50 (bp)": "3164",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.6",
        "Number of CDSs": "775",
        "Average Protein Length": "274.2",
        "Coding Ratio (%)": "57.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "8",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 55.9,
            "contamination": 6.25,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_017427545.1",
                "gtdb_species": "s__Quinella sp017427545",
                "ani": 98.1046,
                "matched_fragments": 152,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Quinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017412925.1",
                "gtdb_species": "s__Quinella sp017412925",
                "ani": 82.255,
                "matched_fragments": 136,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Quinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017535925.1",
                "gtdb_species": "s__Quinella sp017535925",
                "ani": 82.2502,
                "matched_fragments": 136,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Quinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017446845.1",
                "gtdb_species": "s__Quinella sp017446845",
                "ani": 81.8447,
                "matched_fragments": 127,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Quinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017529935.1",
                "gtdb_species": "s__Quinella sp017529935",
                "ani": 81.7504,
                "matched_fragments": 131,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Quinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017428215.1",
                "gtdb_species": "s__Quinella sp017428215",
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                "matched_fragments": 129,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Quinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017527075.1",
                "gtdb_species": "s__Quinella sp017527075",
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                "matched_fragments": 130,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Quinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.37",
                "min_intra_species_ani": "95.37",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905234235.1",
                "gtdb_species": "s__Quinella sp905234235",
                "ani": 80.408,
                "matched_fragments": 116,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Quinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002448305.1",
                "gtdb_species": "s__Quinella sp002448305",
                "ani": 80.3707,
                "matched_fragments": 103,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Quinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.98",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017534385.1",
                "gtdb_species": "s__Quinella sp017534385",
                "ani": 80.2141,
                "matched_fragments": 113,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Quinella",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905234395.1",
                "gtdb_species": "s__Quinella sp905234395",
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                "matched_fragments": 114,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Quinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_017406175.1",
                "gtdb_species": "s__Quinella sp017406175",
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                "matched_fragments": 110,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Quinella",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017515635.1",
                "gtdb_species": "s__Quinella sp017515635",
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                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Quinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015206805.1",
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                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Quinella",
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            },
            {
                "accession": "GCA_014764605.1",
                "gtdb_species": "s__Quinella sp014764605",
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            },
            {
                "accession": "GCA_017554285.1",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_017549815.1",
                "gtdb_species": "s__Quinella sp017549815",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.133,
        "cell_length": 0.67,
        "doubling_h": 0.403,
        "growth_tmp": 34.648,
        "optimum_tmp": 35.425,
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        "gc_content": 50.372,
        "coding_genes": 2587.0,
        "rRNA16S_genes": 5.333,
        "tRNA_genes": 60.0,
        "gram_stain": 0.045,
        "sporulation": 0.0,
        "motility": 0.736,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.555,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.444,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Selenomonadales",
        "f__Selenomonadaceae",
        "g__Quinella",
        "s__Quinella sp017427545"
    ],
    "_genome_taxon": [
        "Selenomonadaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Selenomonadales",
        "f__Selenomonadaceae",
        "g__Quinella",
        "s__Quinella sp017427545",
        "Bacteria",
        "Bacillota",
        "C",
        "Negativicutes",
        "Selenomonadales",
        "Selenomonadaceae",
        "Quinella",
        "Quinella",
        "sp017427545"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}