{ "type": "genome", "identifier": "GCA_017463585.1", "organism": "Rikenellaceae bacterium", "title": "Rikenellaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_017463585.1", "bioproject": "PRJNA657473", "biosample": "SAMN16344483", "wgs_master": "JAFTOX000000000.1", "refseq_category": "na", "taxid": "2049048", "species_taxid": "2049048", "organism_name": "Rikenellaceae bacterium", "infraspecific_name": "", "isolate": "RGIG4016", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/19", "asm_name": "ASM1746358v1", "submitter": "Nanjing Agricultural University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/463/585/GCA_017463585.1_ASM1746358v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-19", "dateModified": "2021-03-19", "datePublished": "2021-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Rikenellaceae bacterium" ], "sample_taxid": [ "2049048" ], "sample_host_organism": [ "roe deer" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "0.597 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2104141", "Number of Sequences": "31", "Longest Sequences (bp)": "498532", "N50 (bp)": "126880", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.6", "Number of CDSs": "1847", "Average Protein Length": "334.4", "Coding Ratio (%)": "88.1", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alistipes finegoldii", "strain": "strain=DSM 17242", "accession": "GCA_000265365.1", "taxid": 214856, "species_taxid": 214856, "relation_to_type": "type", "validated": true, "ani": 77.3692, "matched_fragments": 113, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes megaguti", "strain": "strain=Marseille-P5997", "accession": "GCA_900604385.1", "taxid": 2364787, "species_taxid": 2364787, "relation_to_type": "type", "validated": true, "ani": 77.093, "matched_fragments": 94, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes timonensis", "strain": 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76.8006, "matched_fragments": 108, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes montrealensis", "strain": "strain=kh20", "accession": "GCA_018362775.1", "taxid": 2834113, "species_taxid": 2834113, "relation_to_type": "type", "validated": true, "ani": 76.7858, "matched_fragments": 104, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes senegalensis", "strain": "strain=JC50", "accession": "GCA_000312145.1", "taxid": 1288121, "species_taxid": 1288121, "relation_to_type": "type", "validated": true, "ani": 76.687, "matched_fragments": 108, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes onderdonkii subsp. vulgaris", "strain": "strain=3BBH6", "accession": "GCA_006542645.1", "taxid": 2585117, "species_taxid": 328813, "relation_to_type": "type", "validated": true, "ani": 76.6848, "matched_fragments": 100, 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