{ "type": "genome", "identifier": "GCA_017472425.1", "organism": "Alistipes sp.", "title": "Alistipes sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_017472425.1", "bioproject": "PRJNA657473", "biosample": "SAMN16345192", "wgs_master": "JAFUQE000000000.1", "refseq_category": "na", "taxid": "1872444", "species_taxid": "1872444", "organism_name": "Alistipes sp.", "infraspecific_name": "", "isolate": "RGIG4725", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/19", "asm_name": "ASM1747242v1", "submitter": "Nanjing Agricultural University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/472/425/GCA_017472425.1_ASM1747242v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-19", "dateModified": "2021-03-19", "datePublished": "2021-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Alistipes sp." ], "sample_taxid": [ "1872444" ], "sample_host_organism": [ "roe deer" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "0.559 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 65.97, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1969187", "Number of Sequences": "87", "Longest Sequences (bp)": "101210", "N50 (bp)": "35377", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.4", "Number of CDSs": "1545", "Average Protein Length": "370.8", "Coding Ratio (%)": "87.3", "Number of rRNAs": "0", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alistipes megaguti", "strain": "strain=Marseille-P5997", "accession": "GCA_900604385.1", "taxid": 2364787, "species_taxid": 2364787, "relation_to_type": "type", "validated": true, "ani": 78.6732, "matched_fragments": 247, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes senegalensis", "strain": "strain=JC50", "accession": "GCA_025145645.1", "taxid": 1288121, "species_taxid": 1288121, "relation_to_type": "type", "validated": true, "ani": 78.55, "matched_fragments": 233, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes shahii", "strain": "strain=WAL 8301", "accession": "GCA_000210575.1", "taxid": 328814, 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"matched_fragments": 207, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes provencensis", "strain": "strain=Marseille-P2431", "accession": "GCA_900083545.1", "taxid": 1816676, "species_taxid": 1816676, "relation_to_type": "type", "validated": true, "ani": 78.2494, "matched_fragments": 246, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes onderdonkii", "strain": "strain=DSM 19147", "accession": "GCA_000374505.1", "taxid": 328813, "species_taxid": 328813, "relation_to_type": "type", "validated": true, "ani": 78.094, "matched_fragments": 208, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes onderdonkii", "strain": "strain=DSM 19147", "accession": "GCA_025145285.1", "taxid": 328813, "species_taxid": 328813, "relation_to_type": "type", "validated": true, "ani": 78.0686, "matched_fragments": 211, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes finegoldii", "strain": "strain=DSM 17242", "accession": "GCA_000265365.1", "taxid": 214856, "species_taxid": 214856, "relation_to_type": "type", "validated": true, "ani": 77.9696, "matched_fragments": 221, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes onderdonkii subsp. vulgaris", "strain": "strain=3BBH6", "accession": "GCA_006542645.1", "taxid": 2585117, "species_taxid": 328813, "relation_to_type": "type", "validated": true, "ani": 77.9412, "matched_fragments": 207, "total_fragments": 613, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 65.97, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017624955.1", "gtdb_species": "s__Alistipes sp017624955", "ani": 96.9054, "matched_fragments": 552, "total_fragments": 613, "gtdb_taxonomy": 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