{
    "type": "genome",
    "identifier": "GCA_017476345.1",
    "organism": "Fibrobacter sp.",
    "title": "Fibrobacter sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017476345.1",
        "bioproject": "PRJNA657473",
        "biosample": "SAMN16345449",
        "wgs_master": "JAFVAB000000000.1",
        "refseq_category": "na",
        "taxid": "35828",
        "species_taxid": "35828",
        "organism_name": "Fibrobacter sp.",
        "infraspecific_name": "",
        "isolate": "RGIG4982",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/19",
        "asm_name": "ASM1747634v1",
        "submitter": "Nanjing Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/476/345/GCA_017476345.1_ASM1747634v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-19",
    "dateModified": "2021-03-19",
    "datePublished": "2021-03-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fibrobacter sp."
        ],
        "sample_taxid": [
            "35828"
        ],
        "sample_host_organism": [
            "roe deer"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "0.629 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 50.19,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2170449",
        "Number of Sequences": "744",
        "Longest Sequences (bp)": "13569",
        "N50 (bp)": "3114",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.2",
        "Number of CDSs": "1213",
        "Average Protein Length": "280.6",
        "Coding Ratio (%)": "47.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Fibrobacter succinogenes subsp. succinogenes",
                "strain": "strain=S85",
                "accession": "GCA_000146505.1",
                "taxid": 834,
                "species_taxid": 833,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2359,
                "matched_fragments": 133,
                "total_fragments": 288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fibrobacter succinogenes subsp. succinogenes",
                "strain": "strain=S85",
                "accession": "GCA_000024665.1",
                "taxid": 834,
                "species_taxid": 833,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2359,
                "matched_fragments": 133,
                "total_fragments": 288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hallerella succinigenes",
                "strain": "strain=UWS3",
                "accession": "GCA_002797675.1",
                "taxid": 1896222,
                "species_taxid": 1896222,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.755,
                "matched_fragments": 50,
                "total_fragments": 288,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 50.19,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900143055.1",
                "gtdb_species": "s__Fibrobacter sp900143055",
                "ani": 95.4971,
                "matched_fragments": 249,
                "total_fragments": 288,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.51",
                "min_intra_species_ani": "95.61",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902800815.1",
                "gtdb_species": "s__Fibrobacter succinogenes_B",
                "ani": 88.9833,
                "matched_fragments": 227,
                "total_fragments": 288,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.10",
                "min_intra_species_ani": "97.10",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002449765.1",
                "gtdb_species": "s__Fibrobacter sp002449765",
                "ani": 88.1089,
                "matched_fragments": 216,
                "total_fragments": 288,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.21",
                "min_intra_species_ani": "96.54",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_017615055.1",
                "gtdb_species": "s__Fibrobacter sp017615055",
                "ani": 87.368,
                "matched_fragments": 189,
                "total_fragments": 288,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902762305.1",
                "gtdb_species": "s__Fibrobacter succinogenes_I",
                "ani": 84.1657,
                "matched_fragments": 203,
                "total_fragments": 288,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902771595.1",
                "gtdb_species": "s__Fibrobacter succinogenes_C",
                "ani": 83.7496,
                "matched_fragments": 197,
                "total_fragments": 288,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "98.72",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017551775.1",
                "gtdb_species": "s__Fibrobacter sp017551775",
                "ani": 82.6377,
                "matched_fragments": 184,
                "total_fragments": 288,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017412605.1",
                "gtdb_species": "s__Fibrobacter sp017412605",
                "ani": 81.7429,
                "matched_fragments": 156,
                "total_fragments": 288,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017642335.1",
                "gtdb_species": "s__Fibrobacter sp017642335",
                "ani": 81.6909,
                "matched_fragments": 156,
                "total_fragments": 288,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "98.30",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017649565.1",
                "gtdb_species": "s__Fibrobacter sp017649565",
                "ani": 81.114,
                "matched_fragments": 140,
                "total_fragments": 288,
                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.31,
        "cell_length": -0.072,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 3549223.111,
        "gc_content": 48.062,
        "coding_genes": 3037.6,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 58.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Fibrobacterota",
        "c__Fibrobacteria",
        "o__Fibrobacterales",
        "f__Fibrobacteraceae",
        "g__Fibrobacter",
        "s__Fibrobacter sp900143055"
    ],
    "_genome_taxon": [
        "Fibrobacter",
        "sp.",
        "d__Bacteria",
        "p__Fibrobacterota",
        "c__Fibrobacteria",
        "o__Fibrobacterales",
        "f__Fibrobacteraceae",
        "g__Fibrobacter",
        "s__Fibrobacter sp900143055",
        "Bacteria",
        "Fibrobacterota",
        "Fibrobacteria",
        "Fibrobacterales",
        "Fibrobacteraceae",
        "Fibrobacter",
        "Fibrobacter",
        "sp900143055"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}