{ "type": "genome", "identifier": "GCA_017521145.1", "organism": "Akkermansia sp.", "title": "Akkermansia sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_017521145.1", "bioproject": "PRJNA657473", "biosample": "SAMN16346792", "wgs_master": "JAFXDR000000000.1", "refseq_category": "na", "taxid": "1872421", "species_taxid": "1872421", "organism_name": "Akkermansia sp.", "infraspecific_name": "", "isolate": "RGIG6321", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/22", "asm_name": "ASM1752114v1", "submitter": "Nanjing Agricultural University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/521/145/GCA_017521145.1_ASM1752114v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-22", "dateModified": "2021-03-22", "datePublished": "2021-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Akkermansia sp." ], "sample_taxid": [ "1872421" ], "sample_host_organism": [ "sheep" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "0.576 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 57.29, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2028070", "Number of Sequences": "204", "Longest Sequences (bp)": "40952", "N50 (bp)": "14098", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.2", "Number of CDSs": "1543", "Average Protein Length": "332.1", "Coding Ratio (%)": "75.8", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 57.29, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017521145.1", "gtdb_species": "s__Akkermansia sp017521145", "ani": 100.0, "matched_fragments": 566, "total_fragments": 574, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_017435365.1", "gtdb_species": "s__Akkermansia sp017435365", "ani": 83.9926, "matched_fragments": 405, "total_fragments": 574, 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"Akkermansiaceae", "Akkermansia", "Akkermansia", "sp017521145" ], "_meo": [ { "id": "MEO_0000046", "label": "rumen" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }