{ "type": "genome", "identifier": "GCA_017521345.1", "organism": "Ruminiclostridium sp.", "title": "Ruminiclostridium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_017521345.1", "bioproject": "PRJNA657473", "biosample": "SAMN16346769", "wgs_master": "JAFXCU000000000.1", "refseq_category": "na", "taxid": "2053608", "species_taxid": "2053608", "organism_name": "Ruminiclostridium sp.", "infraspecific_name": "", "isolate": "RGIG6298", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/22", "asm_name": "ASM1752134v1", "submitter": "Nanjing Agricultural University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/521/345/GCA_017521345.1_ASM1752134v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-22", "dateModified": "2021-03-22", "datePublished": "2021-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Ruminiclostridium sp." ], "sample_taxid": [ "2053608" ], "sample_host_organism": [ "sheep" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "0.542 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 57.64, "contamination": 8.33, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1920153", "Number of Sequences": "237", "Longest Sequences (bp)": "53700", "N50 (bp)": "9885", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.6", "Number of CDSs": "1705", "Average Protein Length": "286.7", "Coding Ratio (%)": "76.4", "Number of rRNAs": "2", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Evtepia gabavorous", "strain": "strain=KLE1738", "accession": "GCA_008121455.1", "taxid": 2211183, "species_taxid": 2211183, "relation_to_type": "type", "validated": true, "ani": 79.6137, "matched_fragments": 247, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Evtepia gabavorous", "strain": "strain=KLE1738", "accession": "GCA_003425665.1", "taxid": 2211183, "species_taxid": 2211183, "relation_to_type": "type", "validated": true, "ani": 79.6137, "matched_fragments": 247, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoflavonifractor gallinarum", "strain": "strain=DSM 107456", "accession": "GCA_014982855.1", 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