{
    "type": "genome",
    "identifier": "GCA_017541085.1",
    "organism": "Prevotella sp.",
    "title": "Prevotella sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017541085.1",
        "bioproject": "PRJNA657473",
        "biosample": "SAMN16347366",
        "wgs_master": "JAFXZU000000000.1",
        "refseq_category": "na",
        "taxid": "59823",
        "species_taxid": "59823",
        "organism_name": "Prevotella sp.",
        "infraspecific_name": "",
        "isolate": "RGIG6895",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/22",
        "asm_name": "ASM1754108v1",
        "submitter": "Nanjing Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/541/085/GCA_017541085.1_ASM1754108v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-22",
    "dateModified": "2021-03-22",
    "datePublished": "2021-03-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Prevotella sp."
        ],
        "sample_taxid": [
            "59823"
        ],
        "sample_host_organism": [
            "sheep"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "0.721 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 81.25,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2519261",
        "Number of Sequences": "51",
        "Longest Sequences (bp)": "320305",
        "N50 (bp)": "81123",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.3",
        "Number of CDSs": "1868",
        "Average Protein Length": "388.4",
        "Coding Ratio (%)": "86.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Palleniella intestinalis",
                "strain": "strain=PINT",
                "accession": "GCA_013166595.1",
                "taxid": 2736291,
                "species_taxid": 2736291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6749,
                "matched_fragments": 79,
                "total_fragments": 815,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 81.25,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002373375.1",
                "gtdb_species": "s__Prevotella sp002373375",
                "ani": 95.1401,
                "matched_fragments": 561,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.88",
                "min_intra_species_ani": "95.14",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.66",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002392645.1",
                "gtdb_species": "s__Prevotella sp002392645",
                "ani": 82.7861,
                "matched_fragments": 284,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.38",
                "min_intra_species_ani": "96.38",
                "mean_intra_species_af": "0.66",
                "min_intra_species_af": "0.66",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016281055.1",
                "gtdb_species": "s__Prevotella sp016281055",
                "ani": 80.2149,
                "matched_fragments": 326,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017642485.1",
                "gtdb_species": "s__Prevotella sp017642485",
                "ani": 78.6583,
                "matched_fragments": 112,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002353585.1",
                "gtdb_species": "s__Prevotella sp002353585",
                "ani": 78.26,
                "matched_fragments": 148,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.91",
                "min_intra_species_ani": "95.27",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_905233245.1",
                "gtdb_species": "s__Prevotella sp905233245",
                "ani": 78.1565,
                "matched_fragments": 138,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.87",
                "min_intra_species_ani": "97.81",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017541365.1",
                "gtdb_species": "s__Prevotella sp017541365",
                "ani": 77.8609,
                "matched_fragments": 105,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018065145.1",
                "gtdb_species": "s__Prevotella sp018065145",
                "ani": 77.7883,
                "matched_fragments": 124,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017478025.1",
                "gtdb_species": "s__Prevotella sp017478025",
                "ani": 77.6402,
                "matched_fragments": 135,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.24",
                "min_intra_species_ani": "95.24",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017479675.1",
                "gtdb_species": "s__Prevotella sp017479675",
                "ani": 77.5637,
                "matched_fragments": 130,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.31",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.63",
                "min_intra_species_af": "0.60",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902799455.1",
                "gtdb_species": "s__Prevotella sp902799455",
                "ani": 77.2816,
                "matched_fragments": 88,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905233165.1",
                "gtdb_species": "s__Prevotella sp905233165",
                "ani": 77.1602,
                "matched_fragments": 97,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017475005.1",
                "gtdb_species": "s__Prevotella sp017475005",
                "ani": 77.1487,
                "matched_fragments": 84,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.77",
                "min_intra_species_ani": "98.77",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017623655.1",
                "gtdb_species": "s__Prevotella sp017623655",
                "ani": 76.7554,
                "matched_fragments": 89,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900552965.1",
                "gtdb_species": "s__Prevotella sp900552965",
                "ani": 76.3952,
                "matched_fragments": 64,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "mean_intra_species_ani": "99.78",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_017415455.1",
                "gtdb_species": "s__Prevotella sp017415455",
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                "matched_fragments": 53,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "mean_intra_species_ani": "98.31",
                "min_intra_species_ani": "98.11",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900548195.1",
                "gtdb_species": "s__Prevotella sp900548195",
                "ani": 76.0585,
                "matched_fragments": 71,
                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "mean_intra_species_ani": "96.71",
                "min_intra_species_ani": "95.27",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.226,
        "cell_length": 0.114,
        "doubling_h": null,
        "growth_tmp": 36.755,
        "optimum_tmp": 35.219,
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        "coding_genes": 2508.172,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 50.875,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.975,
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        "vibrio_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Prevotella",
        "s__Prevotella sp945941025"
    ],
    "_genome_taxon": [
        "Prevotella",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Prevotella",
        "s__Prevotella sp945941025",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Prevotella",
        "Prevotella",
        "sp945941025"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}