# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_60	LOCUS_00600	sequence01:62486..63367(+)	frameshift		62343	WP_001701073.1	peptide chain release factor 2	100.0	80.3	99.3
MGA_74	LOCUS_00740	sequence01:83784..84263(+)	partial			WP_001298920.1	selenium cofactor biosynthesis protein YqeC	100.0	62.1	99.4
MGA_87	LOCUS_00870	sequence01:101362..101727(+)	frameshift,internal_stop_codon	101725..101727(+)	101396	WP_001303644.1	YscQ/HrcQ family type III secretion apparatus protein	90.1	33.2	96.3
MGA_88	LOCUS_00880	sequence01:101788..102309(+)	internal_stop_codon	101725..101727(+)		WP_001303644.1	YscQ/HrcQ family type III secretion apparatus protein	99.4	52.4	92.4
MGA_90	LOCUS_00900	sequence01:102974..103159(+)	frameshift		103156	WP_000341004.1	EscS/YscS/HrcS family type III secretion system export apparatus protein	100.0	70.9	100.0
MGA_92	LOCUS_00920	sequence01:104011..104742(+)	frameshift		104715	WP_001284720.1	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	96.7	63.5	95.3
MGA_102	LOCUS_01020	sequence01:110227..110382(+)	internal_stop_codon	110380..110382(+)		WP_053885967.1	response regulator transcription factor	100.0	24.3	98.0
MGA_103	LOCUS_01030	sequence01:110413..110859(+)	internal_stop_codon	110380..110382(+)		WP_000516283.1	response regulator transcription factor	100.0	70.5	99.3
MGA_178	LOCUS_01780	sequence01:198578..199282(-)	internal_stop_codon	199370..199372(-)		WP_001268460.1	YgcG family protein	88.0	71.0	88.3
MGA_189	LOCUS_01890	sequence02:9271..10458(+)	partial			WP_001333576.1	phosphoethanolamine transferase	100.0	73.0	99.7
MGA_268	LOCUS_02680	sequence02:90853..91485(+)	partial			WP_001351324.1	CfaE/CblD family pilus tip adhesin	100.0	58.0	100.0
MGA_405	LOCUS_04050	sequence03:52986..53543(-)	frameshift		53592	WP_001351393.1	DUF2686 family protein	100.0	70.1	99.5
MGA_456	LOCUS_04560	sequence03:108821..110164(+)	frameshift,internal_stop_codon	110409..110411(+)	110363,110131	WP_000036434.1	protein YjgL	99.1	81.6	68.0
MGA_473	LOCUS_04730	sequence03:132323..133339(-)	partial			WP_011727550.1	SIR2 family protein	58.0	37.1	26.1
MGA_488	LOCUS_04880	sequence03:146468..146740(+)	partial			WP_011141823.1	ribbon-helix-helix domain-containing protein	70.0	69.2	44.4
MGA_491	LOCUS_04910	sequence03:148259..148666(+)	partial			WP_001218324.1	integrase arm-type DNA-binding domain-containing protein	85.9	28.8	95.7
MGA_598	LOCUS_05970	sequence04:116691..116864(-)	partial			WP_000942006.1	DUF2773 domain-containing protein	100.0	61.3	89.5
MGA_630	LOCUS_06290	sequence05:7602..8087(-)	partial			WP_001308094.1	shikimate kinase AroK	100.0	67.1	100.0
MGA_653	LOCUS_06520	sequence05:33022..33315(+)	internal_stop_codon	33313..33315(+)		WP_000039084.1	recombination-promoting nuclease RpnA	100.0	33.2	100.0
MGA_654	LOCUS_06530	sequence05:33328..33900(+)	internal_stop_codon	33313..33315(+)		WP_000039059.1	recombination-promoting nuclease RpnA	100.0	65.1	99.5
MGA_656	LOCUS_06550	sequence05:35040..35420(+)	partial			WP_000958727.1	DNA utilization protein GntX	100.0	55.5	99.2
MGA_731	LOCUS_07300	sequence05:119183..120541(-)	internal_stop_codon	120791..120793(-)		WP_011069547.1	DUF4049 domain-containing protein	99.8	76.3	90.9
MGA_746	LOCUS_07450	sequence06:360..1505(+)	internal_stop_codon	168..170(+)		WP_000946591.1	fimbrial biogenesis outer membrane usher protein	100.0	46.7	97.1
MGA_747	LOCUS_07460	sequence06:1518..2300(+)	internal_stop_codon	2298..2300(+)		WP_000871667.1	hypothetical protein	100.0	81.5	98.1
MGA_781	LOCUS_07800	sequence06:39315..39464(+)	internal_stop_codon	39462..39464(+)		WP_000566154.1	helix-turn-helix transcriptional regulator	100.0	56.3	100.0
MGA_836	LOCUS_08350	sequence06:97776..98225(-)	frameshift		97856	WP_001151855.1	RNA 2'-phosphotransferase	82.6	66.8	100.0
MGA_841	LOCUS_08400	sequence06:101770..102021(-)	partial			WP_000986206.1	anti-adapter protein IraD	100.0	63.8	95.2
MGA_859	LOCUS_08580	sequence06:123795..125870(+)	partial			WP_002209166.1	McrB family protein	35.5	35.7	53.6
MGA_862	LOCUS_08610	sequence06:127640..129787(+)	partial			WP_011071650.1	N-6 DNA methylase	16.9	16.1	38.5
MGA_863	LOCUS_08620	sequence06:129787..131241(+)	partial			WP_000548846.1	restriction endonuclease subunit S	22.1	25.5	34.5
MGA_866	LOCUS_08640	sequence07:68..724(-)	partial			WP_000129338.1	type III secretion system effector EspX1	100.0	46.1	93.6
MGA_976	LOCUS_09730	sequence08:6861..7172(-)	frameshift		7222	WP_000632888.1	ShET2/EspL2 family type III secretion system effector toxin	100.0	19.7	98.1
MGA_977	LOCUS_09740	sequence08:7214..8434(-)	frameshift		7222	WP_000632888.1	ShET2/EspL2 family type III secretion system effector toxin	99.8	77.3	99.3
MGA_1002	LOCUS_09990	sequence08:39967..41262(+)	frameshift		39864,39942	WP_000579094.1	SopA family protein	100.0	81.9	88.6
MGA_1058	LOCUS_10540	sequence08:102313..102642(+)	partial			WP_000819746.1	DDRRRQL repeat protein YjdP	56.0	56.0	91.8
MGA_1145	LOCUS_11410	sequence10:1..839(+)	partial			WP_000014967.1	RHS element core protein	100.0	19.7	97.8
MGA_1177	LOCUS_11730	sequence10:36283..36819(+)	partial			WP_000204742.1	O-antigen ligase RfaL	100.0	44.3	100.0
MGA_1221	LOCUS_12170	sequence10:85127..85357(+)	partial			WP_032666220.1	integrase arm-type DNA-binding domain-containing protein	92.1	16.6	72.9
MGA_1222	LOCUS_12180	sequence10:85563..85970(+)	frameshift		85937	WP_141174869.1	HNH endonuclease	92.6	42.8	94.4
MGA_1223	LOCUS_12190	sequence10:85975..86274(+)	frameshift,internal_stop_codon	86272..86274(+)	85943	WP_000199879.1	HNH endonuclease	86.9	29.6	89.5
MGA_1359	LOCUS_13520	sequence12:73124..73309(+)	partial			WP_000054752.1	4Fe-4S dicluster ferredoxin YfhL	100.0	70.9	100.0
MGA_1455	LOCUS_14480	sequence14:37758..38150(-)	internal_stop_codon	38277..38279(-)		WP_000088114.1	fimbrial chaperone	100.0	53.5	99.2
MGA_1456	LOCUS_14490	sequence14:38277..38489(-)	internal_stop_codon	38277..38279(-)		WP_000088114.1	fimbrial chaperone	100.0	28.8	100.0
MGA_1628	LOCUS_16200	sequence18:220..681(+)	partial			WP_014966189.1	RHS element core protein	100.0	11.0	99.3
MGA_1630	LOCUS_16220	sequence18:976..1290(-)	frameshift,internal_stop_codon	1539..1541(-)	1304	WP_102135778.1	IS1 family transposase	73.1	42.2	81.6
MGA_1721	LOCUS_17130	sequence20:14003..14575(-)	partial			WP_001301527.1	protein bax	100.0	69.3	100.0
MGA_1737	LOCUS_17290	sequence20:30614..31483(-)	frameshift		31491	WP_000364884.1	HlyD family secretion protein	100.0	76.5	99.7
MGA_1738	LOCUS_17300	sequence20:31432..31749(-)	frameshift		31488	WP_000364874.1	HlyD family secretion protein	87.6	24.3	95.7
MGA_1747	LOCUS_17380	sequence21:117..506(-)	partial			WP_001315275.1	LuxR family transcriptional regulator HyxR	94.6	46.2	100.0
MGA_1833	LOCUS_18220	sequence23:20475..20642(-)	partial			WP_000736860.1	YhfG family protein	65.5	65.5	100.0
MGA_1897	LOCUS_18850	sequence26:6275..6700(+)	partial			WP_000041588.1	zinc resistance sensor/chaperone ZraP	84.4	63.3	98.3
MGA_1921	LOCUS_19080	sequence27:206..838(+)	internal_stop_codon	836..838(+)		WP_000491412.1	alpha-amylase family glycosyl hydrolase	100.0	28.0	96.2
MGA_2018	LOCUS_20020	sequence29:25065..25316(+)	partial			WP_001393497.1	PerC family transcriptional regulator	100.0	50.6	97.6
MGA_2026	LOCUS_20090	sequence30:274..537(+)	partial			WP_001701448.1	zinc-ribbon domain-containing protein	100.0	50.3	98.9
MGA_2027	LOCUS_20100	sequence30:737..967(-)	partial			WP_014966185.1	hypothetical protein	51.3	44.8	97.4
MGA_2056	LOCUS_20380	sequence31:574..936(+)	partial			WP_001286216.1	gamma carbonic anhydrase family protein	100.0	65.2	100.0
MGA_2062	LOCUS_20440	sequence31:3582..3890(-)	internal_stop_codon	4029..4031(-)		WP_000228535.1	DNA-protecting protein DprA	100.0	27.3	99.0
MGA_2063	LOCUS_20450	sequence31:4029..4706(-)	internal_stop_codon	4029..4031(-)		WP_000228535.1	DNA-protecting protein DprA	100.0	60.2	100.0
MGA_2128	LOCUS_21090	sequence33:1..757(+)	partial			WP_000445164.1	PDDEXK nuclease domain-containing protein	100.0	66.9	97.2
MGA_2170	LOCUS_21510	sequence34:16295..16471(+)	partial			WP_000160093.1	6-phospho-alpha-glucosidase	100.0	13.2	100.0
MGA_2192	LOCUS_21730	sequence35:16642..16971(-)	frameshift,internal_stop_codon	16977..16979(-)	17150	WP_001447126.1	MarR family transcriptional regulator	97.2	57.9	74.5
MGA_2195	LOCUS_21760	sequence35:20205..20729(+)	frameshift,internal_stop_codon	20908..20910(+),20926..20928(+),20727..20729(+),20890..20892(+)	20849	WP_001254832.1	GntR family transcriptional regulator YhfZ	100.0	58.1	91.4
MGA_2206	LOCUS_21850	sequence36:6021..7853(-)	partial			WP_001282813.1	phage tail tape measure protein	79.5	59.0	38.8
MGA_2215	LOCUS_21940	sequence36:12050..12250(-)	partial			WP_000601362.1	hypothetical protein	69.7	69.7	100.0
MGA_2243	LOCUS_22210	sequence37:17633..17863(-)	partial			WP_001290170.1	DUF4942 domain-containing protein	100.0	27.1	92.1
MGA_2263	LOCUS_22400	sequence39:800..958(-)	frameshift,internal_stop_codon	987..989(-)	1043,1100	WP_001260393.1	hypothetical protein	100.0	25.1	82.7
MGA_2264	LOCUS_22410	sequence39:993..1268(-)	frameshift,internal_stop_codon	987..989(-),1341..1343(-)	1043,1100	WP_001260393.1	hypothetical protein	61.5	27.1	89.3
MGA_2274	LOCUS_22510	sequence39:11027..11617(-)	partial			WP_000071962.1	IS256 family transposase	93.9	63.7	91.3
MGA_2275	LOCUS_22520	sequence39:11639..11770(-)	frameshift,internal_stop_codon	11638..11640(-)	11841	WP_025246912.1	IS256-like element ISSoEn2 family transposase	100.0	10.7	90.7
MGA_2277	LOCUS_22540	sequence39:12430..12978(+)	partial			WP_010932588.1	site-specific DNA-methyltransferase	97.3	27.2	65.4
MGA_2334	LOCUS_23110	sequence45:1..564(+)	partial			WP_000044314.1	acetaldehyde dehydrogenase	100.0	59.2	98.9
MGA_2351	LOCUS_23280	sequence46:8155..8322(+)	internal_stop_codon	8554..8556(+),8140..8142(+)		WP_001254108.1	type I toxin-antitoxin system toxin Ldr family protein	100.0	60.4	94.5
MGA_2370	LOCUS_23470	sequence48:6603..7184(+)	frameshift		7151	WP_001336393.1	YaeF family permuted papain-like enzyme	99.0	69.7	96.3
MGA_2371	LOCUS_23480	sequence48:7190..7426(+)	frameshift		7151	WP_000360445.1	YaeF family permuted papain-like enzyme	100.0	28.5	98.7
MGA_2372	LOCUS_23490	sequence49:51..179(-)	partial			WP_000016979.1	site-specific integrase	90.5	14.1	73.7
MGA_2373	LOCUS_23500	sequence49:344..649(-)	partial			WP_000804064.1	tetracycline efflux MFS transporter Tet(A)	94.1	23.3	68.4
MGA_2386	LOCUS_23600	sequence51:1..676(+)	partial			WP_000030657.1	cell envelope integrity protein TolA	59.4	31.6	93.2
MGA_2401	LOCUS_23720	sequence54:1217..>2470(-)	partial			WP_001297242.1	ornithine decarboxylase SpeF	100.0	57.0	100.0
MGA_2404	LOCUS_23740	sequence55:613..>1831(-)	partial			WP_013098820.1	contact-dependent inhibition effector 16S rRNA endonuclease	62.5	7.6	63.0
