{
    "type": "genome",
    "identifier": "GCA_017554485.1",
    "organism": "Acidaminococcaceae bacterium",
    "title": "Acidaminococcaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017554485.1",
        "bioproject": "PRJNA657473",
        "biosample": "SAMN16348262",
        "wgs_master": "JAFZIG000000000.1",
        "refseq_category": "na",
        "taxid": "2049052",
        "species_taxid": "2049052",
        "organism_name": "Acidaminococcaceae bacterium",
        "infraspecific_name": "",
        "isolate": "RGIG7791",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/22",
        "asm_name": "ASM1755448v1",
        "submitter": "Nanjing Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/554/485/GCA_017554485.1_ASM1755448v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-22",
    "dateModified": "2021-03-22",
    "datePublished": "2021-03-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acidaminococcaceae bacterium"
        ],
        "sample_taxid": [
            "2049052"
        ],
        "sample_host_organism": [
            "water buffalo"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "0.737 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2574659",
        "Number of Sequences": "177",
        "Longest Sequences (bp)": "108311",
        "N50 (bp)": "27486",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.4",
        "Number of CDSs": "2156",
        "Average Protein Length": "321.1",
        "Coding Ratio (%)": "80.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Succiniclasticum ruminis",
                "strain": "strain=DSM 9236",
                "accession": "GCA_900112895.1",
                "taxid": 40841,
                "species_taxid": 40841,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.3085,
                "matched_fragments": 441,
                "total_fragments": 757,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_017554485.1",
                "gtdb_species": "s__Succiniclasticum sp017554485",
                "ani": 100.0,
                "matched_fragments": 754,
                "total_fragments": 757,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Succiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_905233365.1",
                "gtdb_species": "s__Succiniclasticum sp905233365",
                "ani": 82.7789,
                "matched_fragments": 420,
                "total_fragments": 757,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Succiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902801365.1",
                "gtdb_species": "s__Succiniclasticum sp902801365",
                "ani": 82.5195,
                "matched_fragments": 408,
                "total_fragments": 757,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Succiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "97.62",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017405945.1",
                "gtdb_species": "s__Succiniclasticum sp017405945",
                "ani": 82.4243,
                "matched_fragments": 427,
                "total_fragments": 757,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Succiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900112895.1",
                "gtdb_species": "s__Succiniclasticum ruminis",
                "ani": 82.3215,
                "matched_fragments": 439,
                "total_fragments": 757,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Succiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900315925.1",
                "gtdb_species": "s__Succiniclasticum sp900315925",
                "ani": 82.0515,
                "matched_fragments": 438,
                "total_fragments": 757,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Succiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.41",
                "min_intra_species_ani": "95.14",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 42,
                "status": "-"
            },
            {
                "accession": "GCA_017443165.1",
                "gtdb_species": "s__Succiniclasticum sp017443165",
                "ani": 81.7266,
                "matched_fragments": 239,
                "total_fragments": 757,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Succiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003512125.1",
                "gtdb_species": "s__Succiniclasticum sp003512125",
                "ani": 80.9938,
                "matched_fragments": 262,
                "total_fragments": 757,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Succiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.84",
                "min_intra_species_ani": "98.84",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017460905.1",
                "gtdb_species": "s__Succiniclasticum sp017460905",
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                "matched_fragments": 292,
                "total_fragments": 757,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Succiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.67",
                "min_intra_species_ani": "97.67",
                "mean_intra_species_af": "0.73",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002342505.1",
                "gtdb_species": "s__Succiniclasticum sp002342505",
                "ani": 79.6824,
                "matched_fragments": 271,
                "total_fragments": 757,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Succiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.62",
                "min_intra_species_ani": "97.51",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900316935.1",
                "gtdb_species": "s__Succiniclasticum sp900316935",
                "ani": 77.3021,
                "matched_fragments": 113,
                "total_fragments": 757,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Succiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.76",
                "min_intra_species_ani": "99.29",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 11,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.322,
        "cell_length": 0.075,
        "doubling_h": null,
        "growth_tmp": 36.8,
        "optimum_tmp": 36.125,
        "optimum_ph": 7.0,
        "genome_size": 2373228.138,
        "gc_content": 52.9,
        "coding_genes": 2184.333,
        "rRNA16S_genes": 4.5,
        "tRNA_genes": 56.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.25,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.4,
        "coccus_cell_shape": 0.4,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.2
    },
    "_gtdb_taxon": [
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        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Acidaminococcales",
        "f__Acidaminococcaceae",
        "g__Succiniclasticum",
        "s__Succiniclasticum sp017554485"
    ],
    "_genome_taxon": [
        "Acidaminococcaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Acidaminococcales",
        "f__Acidaminococcaceae",
        "g__Succiniclasticum",
        "s__Succiniclasticum sp017554485",
        "Bacteria",
        "Bacillota",
        "C",
        "Negativicutes",
        "Acidaminococcales",
        "Acidaminococcaceae",
        "Succiniclasticum",
        "Succiniclasticum",
        "sp017554485"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}