{
    "type": "genome",
    "identifier": "GCA_017558025.1",
    "organism": "Alistipes sp.",
    "title": "Alistipes sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017558025.1",
        "bioproject": "PRJNA657473",
        "biosample": "SAMN16347955",
        "wgs_master": "JAFYWL000000000.1",
        "refseq_category": "na",
        "taxid": "1872444",
        "species_taxid": "1872444",
        "organism_name": "Alistipes sp.",
        "infraspecific_name": "",
        "isolate": "RGIG7484",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/22",
        "asm_name": "ASM1755802v1",
        "submitter": "Nanjing Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/558/025/GCA_017558025.1_ASM1755802v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-22",
    "dateModified": "2021-03-22",
    "datePublished": "2021-03-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alistipes sp."
        ],
        "sample_taxid": [
            "1872444"
        ],
        "sample_host_organism": [
            "water buffalo"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "0.605 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 5.77,
        "strain_heterogeneity": 40.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2128483",
        "Number of Sequences": "96",
        "Longest Sequences (bp)": "293327",
        "N50 (bp)": "73252",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.9",
        "Number of CDSs": "1649",
        "Average Protein Length": "365.8",
        "Coding Ratio (%)": "85.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "31",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Alistipes provencensis",
                "strain": "strain=Marseille-P2431",
                "accession": "GCA_900083545.1",
                "taxid": 1816676,
                "species_taxid": 1816676,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7601,
                "matched_fragments": 59,
                "total_fragments": 656,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes senegalensis",
                "strain": "strain=FDAARGOS_1578",
                "accession": "GCA_020735725.1",
                "taxid": 1288121,
                "species_taxid": 1288121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4205,
                "matched_fragments": 64,
                "total_fragments": 656,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes senegalensis",
                "strain": "strain=JC50",
                "accession": "GCA_025145645.1",
                "taxid": 1288121,
                "species_taxid": 1288121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3374,
                "matched_fragments": 61,
                "total_fragments": 656,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes senegalensis",
                "strain": "strain=JC50",
                "accession": "GCA_000312145.1",
                "taxid": 1288121,
                "species_taxid": 1288121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2963,
                "matched_fragments": 61,
                "total_fragments": 656,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes shahii",
                "strain": "strain=WAL 8301",
                "accession": "GCA_000210575.1",
                "taxid": 328814,
                "species_taxid": 328814,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.1888,
                "matched_fragments": 66,
                "total_fragments": 656,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 5.77,
            "strain_heterogeneity": 40.0
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        "gtdb_result": [
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                "accession": "GCA_017631255.1",
                "gtdb_species": "s__Alistipes sp017631255",
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                "matched_fragments": 533,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.67",
                "min_intra_species_ani": "95.65",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "conclusive"
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            {
                "accession": "GCA_017465055.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017630455.1",
                "gtdb_species": "s__Alistipes sp017630455",
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                "matched_fragments": 356,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_904502285.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes",
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                "num_clustered_genomes": 2,
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            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017559615.1",
                "gtdb_species": "s__Alistipes sp017559615",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes",
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                "status": "-"
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            {
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                "gtdb_species": "s__Alistipes sp017380955",
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                "mean_intra_species_ani": "N/A",
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                "gtdb_species": "s__Alistipes sp017621455",
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                "matched_fragments": 309,
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            {
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                "mean_intra_species_ani": "N/A",
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                "gtdb_species": "s__Alistipes sp017647625",
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                "accession": "GCA_017559425.1",
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            {
                "accession": "GCA_017631135.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "bacillus_cell_shape": 0.833,
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    "_gtdb_taxon": [
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        "c__Bacteroidia",
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        "g__Alistipes",
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    "_genome_taxon": [
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        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
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        "f__Rikenellaceae",
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        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Rikenellaceae",
        "Alistipes",
        "Alistipes",
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    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}