{
    "type": "genome",
    "identifier": "GCA_017628105.1",
    "organism": "Candidatus Methanomethylophilaceae archaeon",
    "title": "Candidatus Methanomethylophilaceae archaeon",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017628105.1",
        "bioproject": "PRJNA657473",
        "biosample": "SAMN16350096",
        "wgs_master": "JAGBZS000000000.1",
        "refseq_category": "na",
        "taxid": "2517205",
        "species_taxid": "2517205",
        "organism_name": "Candidatus Methanomethylophilaceae archaeon",
        "infraspecific_name": "",
        "isolate": "RGIG9594",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/29",
        "asm_name": "ASM1762810v1",
        "submitter": "Nanjing Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/628/105/GCA_017628105.1_ASM1762810v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-29",
    "dateModified": "2021-03-29",
    "datePublished": "2021-03-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Methanomethylophilaceae archaeon"
        ],
        "sample_taxid": [
            "2517205"
        ],
        "sample_host_organism": [
            "yak"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "0.140 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 66.29,
        "contamination": 5.21,
        "strain_heterogeneity": 83.33,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "486600",
        "Number of Sequences": "62",
        "Longest Sequences (bp)": "35531",
        "N50 (bp)": "13558",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.2",
        "Number of CDSs": "457",
        "Average Protein Length": "278.0",
        "Coding Ratio (%)": "78.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 66.29,
            "contamination": 5.21,
            "strain_heterogeneity": 83.33
        },
        "gtdb_result": [
            {
                "accession": "GCA_017508065.1",
                "gtdb_species": "s__SIG5 sp017508065",
                "ani": 90.6508,
                "matched_fragments": 111,
                "total_fragments": 129,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__SIG5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015063185.1",
                "gtdb_species": "s__SIG5 sp015063185",
                "ani": 83.8046,
                "matched_fragments": 101,
                "total_fragments": 129,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__SIG5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016297775.1",
                "gtdb_species": "s__SIG5 sp016297775",
                "ani": 83.0965,
                "matched_fragments": 91,
                "total_fragments": 129,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__SIG5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.79",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016296195.1",
                "gtdb_species": "s__UBA71 sp016296195",
                "ani": 80.1987,
                "matched_fragments": 53,
                "total_fragments": 129,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017395275.1",
                "gtdb_species": "s__SIG5 sp017395275",
                "ani": 79.4119,
                "matched_fragments": 55,
                "total_fragments": 129,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__SIG5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Thermoplasmatota",
        "c__Thermoplasmata",
        "o__Methanomassiliicoccales",
        "f__Methanomethylophilaceae",
        "g__SIG5",
        "s__"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Methanomethylophilaceae",
        "archaeon",
        "d__Archaea",
        "p__Thermoplasmatota",
        "c__Thermoplasmata",
        "o__Methanomassiliicoccales",
        "f__Methanomethylophilaceae",
        "g__SIG5",
        "s__",
        "Archaea",
        "Thermoplasmatota",
        "Thermoplasmata",
        "Methanomassiliicoccales",
        "Methanomethylophilaceae",
        "SIG5",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}