{ "type": "genome", "identifier": "GCA_017635005.1", "organism": "Treponema sp.", "title": "Treponema sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_017635005.1", "bioproject": "PRJNA657473", "biosample": "SAMN16349748", "wgs_master": "JAGBMI000000000.1", "refseq_category": "na", "taxid": "166", "species_taxid": "166", "organism_name": "Treponema sp.", "infraspecific_name": "", "isolate": "RGIG9246", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/30", "asm_name": "ASM1763500v1", "submitter": "Nanjing Agricultural University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/635/005/GCA_017635005.1_ASM1763500v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-30", "dateModified": "2021-03-30", "datePublished": "2021-03-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Treponema sp." ], "sample_taxid": [ "166" ], "sample_host_organism": [ "water deer" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "0.737 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 66.15, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2595685", "Number of Sequences": "149", "Longest Sequences (bp)": "107160", "N50 (bp)": "32632", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.4", "Number of CDSs": "2170", "Average Protein Length": "342.1", "Coding Ratio (%)": "85.8", "Number of rRNAs": "4", "Number of tRNAs": "39", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Treponema ruminis", "strain": "strain=DSM 103462", "accession": "GCA_014201975.1", "taxid": 744515, "species_taxid": 744515, "relation_to_type": "type", "validated": true, "ani": 80.0849, "matched_fragments": 356, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Treponema saccharophilum", "strain": "strain=DSM 2985", "accession": "GCA_000255555.2", "taxid": 165, "species_taxid": 165, "relation_to_type": "type", "validated": true, "ani": 77.4113, "matched_fragments": 66, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Treponema berlinense", "strain": "strain=ATCC BAA-909", "accession": "GCA_900167025.1", "taxid": 225004, 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