{ "tc_result": [ { "organism_name": "Oricola indica", "strain": "strain=JL-62", "accession": "GCA_019966595.1", "taxid": 2872591, "species_taxid": 2872591, "relation_to_type": "type", "validated": true, "ani": 78.7383, "matched_fragments": 444, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola thermophila", "strain": "strain=MEBiC13590", "accession": "GCA_013358405.1", "taxid": 2742145, "species_taxid": 2742145, "relation_to_type": "type", "validated": true, "ani": 78.5372, "matched_fragments": 407, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor alexandrii", "strain": "strain=Z3-1", "accession": "GCA_004000215.1", "taxid": 2448161, "species_taxid": 2448161, "relation_to_type": "type", "validated": true, "ani": 78.2201, "matched_fragments": 443, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium atlanticum", "strain": "strain=CNPSo 3140", "accession": "GCA_003289965.1", "taxid": 2233532, "species_taxid": 2233532, "relation_to_type": "type", "validated": true, "ani": 78.1399, "matched_fragments": 389, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola cellulosilytica", "strain": "strain=JCM 19534", "accession": "GCA_019966575.1", "taxid": 1429082, "species_taxid": 1429082, "relation_to_type": "type", "validated": true, "ani": 78.1095, "matched_fragments": 325, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 78.1014, "matched_fragments": 370, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea olei", "strain": "strain=JC234", "accession": "GCA_001703635.1", "taxid": 1480615, "species_taxid": 1480615, "relation_to_type": "type", "validated": true, "ani": 78.1011, "matched_fragments": 454, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium waimense", "strain": "strain=ICMP19557", "accession": "GCA_003601975.1", "taxid": 1300307, "species_taxid": 1300307, "relation_to_type": "type", "validated": true, "ani": 78.0253, "matched_fragments": 424, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium hawassense", "strain": "strain=AC99b", "accession": "GCA_003289945.1", "taxid": 1209954, "species_taxid": 1209954, "relation_to_type": "type", "validated": true, "ani": 78.016, "matched_fragments": 420, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium muleiense", "strain": "strain=CGMCC 1.11022", "accession": "GCA_900099905.1", "taxid": 1004279, "species_taxid": 1004279, "relation_to_type": "type", "validated": true, "ani": 77.9659, "matched_fragments": 378, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor arenosus", "strain": "strain=CAU 1489", "accession": "GCA_009742725.1", "taxid": 2682096, "species_taxid": 2682096, "relation_to_type": "type", "validated": true, "ani": 77.9469, "matched_fragments": 401, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhengella mangrovi", "strain": "strain=X9-2-2", "accession": "GCA_002727065.1", "taxid": 1982044, "species_taxid": 1982044, "relation_to_type": "type", "validated": true, "ani": 77.9336, "matched_fragments": 367, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium neociceri", "strain": "strain=CCANP35", "accession": "GCA_013520985.1", "taxid": 1307853, "species_taxid": 1307853, "relation_to_type": "type", "validated": true, "ani": 77.9134, "matched_fragments": 405, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea marina", "strain": "strain=DSM 16791", "accession": "GCA_003182275.1", "taxid": 274592, "species_taxid": 274592, "relation_to_type": "type", "validated": true, "ani": 77.9075, "matched_fragments": 398, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium composti", "strain": "strain=CC-YTH430", "accession": "GCA_004801285.1", "taxid": 2675109, "species_taxid": 2675109, "relation_to_type": "type", "validated": true, "ani": 77.843, "matched_fragments": 394, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium phragmitis", "strain": "strain=1N-3", "accession": "GCA_002980495.1", "taxid": 2670329, "species_taxid": 2670329, "relation_to_type": "type", "validated": true, "ani": 77.7047, "matched_fragments": 305, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelativorans xinjiangense", "strain": "strain=lm93", "accession": "GCA_009812055.1", "taxid": 2681485, "species_taxid": 2681485, "relation_to_type": "type", "validated": true, "ani": 77.6867, "matched_fragments": 384, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella granuli", "strain": "strain=DSM 18401", "accession": "GCA_004341885.1", "taxid": 323621, "species_taxid": 323621, "relation_to_type": "type", "validated": true, "ani": 77.6589, "matched_fragments": 410, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella kummerowiae", "strain": "strain=CCBAU 25048", "accession": "GCA_009827055.1", "taxid": 417745, "species_taxid": 417745, "relation_to_type": "type", "validated": true, "ani": 77.6114, "matched_fragments": 330, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=19-2017", "accession": "GCA_018310375.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 77.3599, "matched_fragments": 315, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=HC19", "accession": "GCA_014595955.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 77.3599, "matched_fragments": 315, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium changzhiense", "strain": "strain=WYCCWR 11279", "accession": "GCA_013087625.1", "taxid": 2692317, "species_taxid": 2692317, "relation_to_type": "type", "validated": true, "ani": 77.3513, "matched_fragments": 286, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium rhizolycopersici", "strain": "strain=DBTS2", "accession": "GCA_013378445.1", "taxid": 2746702, "species_taxid": 2746702, "relation_to_type": "type", "validated": true, "ani": 77.3159, "matched_fragments": 325, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium pseudoryzae", "strain": "strain=DSM 19479", "accession": "GCA_011046245.1", "taxid": 379684, "species_taxid": 379684, "relation_to_type": "type", "validated": true, "ani": 77.3029, "matched_fragments": 269, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor indicus", "strain": "strain=C115", "accession": "GCA_000300515.1", "taxid": 721133, "species_taxid": 721133, "relation_to_type": "type", "validated": true, "ani": 77.2567, "matched_fragments": 244, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gnaphalii", "strain": "strain=DSM 24027", "accession": "GCA_022179205.1", "taxid": 1010610, "species_taxid": 1010610, "relation_to_type": "type", "validated": true, "ani": 76.7285, "matched_fragments": 136, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 76.7248, "matched_fragments": 256, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium longum", "strain": "strain=DSM 23933", "accession": "GCA_022179385.1", "taxid": 767694, "species_taxid": 767694, "relation_to_type": "type", "validated": true, "ani": 76.4471, "matched_fragments": 185, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003149475.2", "gtdb_species": "s__Roseitalea stylonematis", "ani": 98.969, "matched_fragments": 1142, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Roseitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "98.97", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 13, "status": "conclusive" }, { "accession": "GCA_017642895.1", "gtdb_species": "s__Roseitalea sp017642895", "ani": 87.3759, "matched_fragments": 939, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Roseitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004331955.1", "gtdb_species": "s__Roseitalea porphyridii", "ani": 83.3875, "matched_fragments": 834, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Roseitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014904745.1", "gtdb_species": "s__Oricola sp014904745", "ani": 78.9727, "matched_fragments": 529, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Oricola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002698425.1", "gtdb_species": "s__Oricola sp002698425", "ani": 78.7565, "matched_fragments": 512, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Oricola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003577315.1", "gtdb_species": "s__Aquamicrobium_A sp003577315", "ani": 78.5064, "matched_fragments": 365, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aquamicrobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002706335.1", "gtdb_species": "s__Oricola sp002706335", "ani": 78.2417, "matched_fragments": 451, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Oricola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003952485.1", "gtdb_species": "s__Mesorhizobium sp003952485", "ani": 78.0924, "matched_fragments": 436, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_004020545.1", "gtdb_species": "s__Mesorhizobium sp004020545", "ani": 77.9474, "matched_fragments": 415, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.24", "min_intra_species_ani": "97.54", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_013520985.1", "gtdb_species": "s__Mesorhizobium sp013520985", "ani": 77.9068, "matched_fragments": 405, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012911015.1", "gtdb_species": "s__Aliihoeflea sp012911015", "ani": 77.8186, "matched_fragments": 351, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aliihoeflea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014197615.1", "gtdb_species": "s__Rhizobium esperanzae_A", "ani": 77.4232, "matched_fragments": 309, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014595955.1", "gtdb_species": "s__Mesorhizobium_D sp014595955", "ani": 77.3705, "matched_fragments": 315, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003963455.1", "gtdb_species": "s__Mesorhizobium sp003963455", "ani": 77.0858, "matched_fragments": 299, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }