{
    "type": "genome",
    "identifier": "GCA_017652425.1",
    "organism": "Clostridia bacterium",
    "title": "Clostridia bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017652425.1",
        "bioproject": "PRJNA657473",
        "biosample": "SAMN16350131",
        "wgs_master": "JAGCBB000000000.1",
        "refseq_category": "na",
        "taxid": "2044939",
        "species_taxid": "2044939",
        "organism_name": "Clostridia bacterium",
        "infraspecific_name": "",
        "isolate": "RGIG9629",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/30",
        "asm_name": "ASM1765242v1",
        "submitter": "Nanjing Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/652/425/GCA_017652425.1_ASM1765242v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-30",
    "dateModified": "2021-03-30",
    "datePublished": "2021-03-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridia bacterium"
        ],
        "sample_taxid": [
            "2044939"
        ],
        "sample_host_organism": [
            "yak"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "0.506 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 70.37,
        "contamination": 8.33,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1776226",
        "Number of Sequences": "556",
        "Longest Sequences (bp)": "27392",
        "N50 (bp)": "3472",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.6",
        "Number of CDSs": "1230",
        "Average Protein Length": "276.6",
        "Coding Ratio (%)": "57.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 70.37,
            "contamination": 8.33,
            "strain_heterogeneity": 50.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_904502175.1",
                "gtdb_species": "s__RUG420 sp904502175",
                "ani": 97.4749,
                "matched_fragments": 180,
                "total_fragments": 270,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__RUG420",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900317985.1",
                "gtdb_species": "s__RUG420 sp900317985",
                "ani": 84.4626,
                "matched_fragments": 203,
                "total_fragments": 270,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__RUG420",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 49,
                "status": "-"
            },
            {
                "accession": "GCA_017433225.1",
                "gtdb_species": "s__RUG420 sp017433225",
                "ani": 84.4251,
                "matched_fragments": 210,
                "total_fragments": 270,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__RUG420",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.27",
                "min_intra_species_ani": "96.19",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_017461005.1",
                "gtdb_species": "s__RUG420 sp017461005",
                "ani": 83.9673,
                "matched_fragments": 204,
                "total_fragments": 270,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__RUG420",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900317085.1",
                "gtdb_species": "s__RUG420 sp900317085",
                "ani": 83.9437,
                "matched_fragments": 194,
                "total_fragments": 270,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__RUG420",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.92",
                "min_intra_species_ani": "97.74",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 42,
                "status": "-"
            },
            {
                "accession": "GCA_017614275.1",
                "gtdb_species": "s__RUG420 sp017614275",
                "ani": 82.9298,
                "matched_fragments": 129,
                "total_fragments": 270,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__RUG420",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017476565.1",
                "gtdb_species": "s__RUG420 sp017476565",
                "ani": 81.6566,
                "matched_fragments": 143,
                "total_fragments": 270,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__RUG420",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.44",
                "min_intra_species_ani": "98.44",
                "mean_intra_species_af": "0.71",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__RUG420",
        "s__RUG420 sp904502175"
    ],
    "_genome_taxon": [
        "Clostridia",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__RUG420",
        "s__RUG420 sp904502175",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Acutalibacteraceae",
        "RUG420",
        "RUG420",
        "sp904502175"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}