{ "type": "genome", "identifier": "GCA_017855415.1", "organism": "Pirellulales bacterium", "title": "Pirellulales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Clemson University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_017855415.1", "bioproject": "PRJNA699965", "biosample": "SAMN17496106", "wgs_master": "JAFMGI000000000.1", "refseq_category": "na", "taxid": "2715253", "species_taxid": "2715253", "organism_name": "Pirellulales bacterium", "infraspecific_name": "", "isolate": "CPBay_Sum27G08_18", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1785541v1", "submitter": "Clemson University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/855/415/GCA_017855415.1_ASM1785541v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Pirellulales bacterium" ], "sample_taxid": [ "2715253" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Chesapeake Bay" ], "sample_host_location_id": [], "data_size": "1.106 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3905050", "Number of Sequences": "476", "Longest Sequences (bp)": "55312", "N50 (bp)": "10228", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.3", "Number of CDSs": "2586", "Average Protein Length": "372.1", "Coding Ratio (%)": "73.9", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Posidoniimonas polymericola", "strain": "strain=Pla123a", "accession": "GCA_007859935.1", "taxid": 2528002, "species_taxid": 2528002, "relation_to_type": "type", "validated": true, "ani": 75.6365, "matched_fragments": 61, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Botrimarina colliarenosi", "strain": "strain=Pla108", "accession": "GCA_007859955.1", "taxid": 2528001, "species_taxid": 2528001, "relation_to_type": "type", "validated": true, "ani": 75.5223, "matched_fragments": 53, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Posidoniimonas corsicana", "strain": "strain=KOR34", "accession": "GCA_007859765.1", "taxid": 1938618, "species_taxid": 1938618, "relation_to_type": "type", "validated": true, "ani": 75.4177, "matched_fragments": 70, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016779265.1", "gtdb_species": "s__M30B53 sp016779265", "ani": 99.3318, "matched_fragments": 938, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__M30B53", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "99.20", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_018401745.1", "gtdb_species": "s__M30B53 sp018401745", "ani": 79.1455, "matched_fragments": 419, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__M30B53", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.02", "min_intra_species_ani": "95.94", "mean_intra_species_af": "0.68", "min_intra_species_af": "0.66", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_014192425.1", "gtdb_species": "s__QWPN01 sp014192425", "ani": 77.1315, "matched_fragments": 147, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016872925.1", "gtdb_species": "s__QWPN01 sp016872925", "ani": 77.0525, "matched_fragments": 174, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018970605.1", "gtdb_species": "s__QWPN01 sp018970605", "ani": 76.9243, "matched_fragments": 134, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903919035.1", "gtdb_species": "s__QWPN01 sp903919035", "ani": 76.8815, "matched_fragments": 132, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.57", "min_intra_species_ani": "99.56", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_003670825.1", "gtdb_species": "s__QWPN01 sp003670825", "ani": 76.8519, "matched_fragments": 95, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903958265.1", "gtdb_species": "s__QWPN01 sp903958265", "ani": 76.8472, "matched_fragments": 121, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.26", "min_intra_species_ani": "98.26", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_009924545.1", "gtdb_species": "s__F1-20-MAGs016 sp009924545", "ani": 76.7316, "matched_fragments": 128, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__F1-20-MAGs016", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003671185.1", "gtdb_species": "s__QWPN01 sp003671185", "ani": 76.7263, "matched_fragments": 134, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903951635.1", "gtdb_species": "s__QWOP01 sp903951635", "ani": 76.5757, "matched_fragments": 141, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWOP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903885855.1", "gtdb_species": "s__QWOP01 sp903885855", "ani": 76.442, "matched_fragments": 159, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWOP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903949225.1", "gtdb_species": "s__QWOP01 sp903949225", "ani": 76.4286, "matched_fragments": 108, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWOP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903917235.1", "gtdb_species": "s__QWPN01 sp903917235", "ani": 76.361, "matched_fragments": 145, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.02", "min_intra_species_ani": "96.87", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003669605.1", "gtdb_species": "s__QWOP01 sp003669605", "ani": 76.0727, "matched_fragments": 90, "total_fragments": 1056, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWOP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Planctomycetota", "c__Planctomycetia", "o__Pirellulales", "f__UBA1268", "g__M30B53", "s__M30B53 sp016779265" ], "_genome_taxon": [ "Pirellulales", "bacterium", "d__Bacteria", "p__Planctomycetota", "c__Planctomycetia", "o__Pirellulales", "f__UBA1268", "g__M30B53", "s__M30B53 sp016779265", "Bacteria", "Planctomycetota", "Planctomycetia", "Pirellulales", "UBA1268", "M30B53", "M30B53", "sp016779265" ], "_meo": [ { "id": "MEO_0000087", "label": "estuary" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }