{ "type": "genome", "identifier": "GCA_017856655.1", "organism": "Opitutales bacterium", "title": "Opitutales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Clemson University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_017856655.1", "bioproject": "PRJNA699965", "biosample": "SAMN17496061", "wgs_master": "JAFMEP000000000.1", "refseq_category": "na", "taxid": "2026772", "species_taxid": "2026772", "organism_name": "Opitutales bacterium", "infraspecific_name": "", "isolate": "CPBay_Sum0_6G08_49", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1785665v1", "submitter": "Clemson University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/856/655/GCA_017856655.1_ASM1785665v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Opitutales bacterium" ], "sample_taxid": [ "2026772" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Chesapeake Bay" ], "sample_host_location_id": [], "data_size": "0.590 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2146970", "Number of Sequences": "108", "Longest Sequences (bp)": "142523", "N50 (bp)": "33055", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.6", "Number of CDSs": "1770", "Average Protein Length": "364.6", "Coding Ratio (%)": "90.2", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ruficoccus amylovorans", "strain": "strain=JCM31066", "accession": "GCA_014230085.1", "taxid": 1804625, "species_taxid": 1804625, "relation_to_type": "type", "validated": true, "ani": 76.8569, "matched_fragments": 53, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rariglobus hedericola", "strain": "strain=53C-WASEF", "accession": "GCA_007559335.1", "taxid": 2597822, "species_taxid": 2597822, "relation_to_type": "type", "validated": true, "ani": 76.5435, "matched_fragments": 50, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geminisphaera colitermitum", "strain": "strain=TAV2", "accession": "GCA_000171235.2", "taxid": 1148786, "species_taxid": 1148786, "relation_to_type": "type", "validated": true, "ani": 76.1519, "matched_fragments": 62, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter ambystomatis", "strain": "strain=32A", "accession": "GCA_018137965.1", "taxid": 2824561, "species_taxid": 2824561, "relation_to_type": "type", "validated": true, "ani": 75.9723, "matched_fragments": 53, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Opitutus terrae", "strain": "strain=PB90-1", "accession": "GCA_000019965.1", "taxid": 107709, "species_taxid": 107709, "relation_to_type": "type", "validated": true, "ani": 75.7702, "matched_fragments": 60, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus bolidensis", "strain": "strain=DSM 15745", "accession": "GCA_000426385.1", "taxid": 229480, "species_taxid": 229480, "relation_to_type": "type", "validated": true, "ani": 75.2535, "matched_fragments": 52, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 75.2223, "matched_fragments": 95, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella erecta", "strain": "strain=DSM 16858", "accession": "GCA_900111745.1", "taxid": 83460, "species_taxid": 83460, "relation_to_type": "type", "validated": true, "ani": 75.0173, "matched_fragments": 62, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter monticola", "strain": "strain=KACC 19175", "accession": "GCA_016722785.1", "taxid": 1926872, "species_taxid": 1926872, "relation_to_type": "type", "validated": true, "ani": 74.9006, 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