{
    "type": "genome",
    "identifier": "GCA_017886815.1",
    "organism": "Lachnoclostridium sp.",
    "title": "Lachnoclostridium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Biomin Research Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_017886815.1",
        "bioproject": "PRJNA715658",
        "biosample": "SAMN18359885",
        "wgs_master": "JAGHJF000000000.1",
        "refseq_category": "na",
        "taxid": "2028282",
        "species_taxid": "2028282",
        "organism_name": "Lachnoclostridium sp.",
        "infraspecific_name": "",
        "isolate": "MAG.52",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/08",
        "asm_name": "ASM1788681v1",
        "submitter": "Biomin Research Center",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/886/815/GCA_017886815.1_ASM1788681v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-08",
    "dateModified": "2021-04-08",
    "datePublished": "2021-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lachnoclostridium sp."
        ],
        "sample_taxid": [
            "2028282"
        ],
        "sample_host_organism": [
            "Gallus gallus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Austria: Lower Austria"
        ],
        "sample_host_location_id": [],
        "data_size": "0.875 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 64.58,
        "contamination": 0.93,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3094976",
        "Number of Sequences": "371",
        "Longest Sequences (bp)": "35362",
        "N50 (bp)": "10036",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.9",
        "Number of CDSs": "2572",
        "Average Protein Length": "309.7",
        "Coding Ratio (%)": "77.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Enterocloster asparagiformis",
                "strain": "strain=DSM 15981",
                "accession": "GCA_000158075.1",
                "taxid": 333367,
                "species_taxid": 333367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8526,
                "matched_fragments": 231,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster asparagiformis",
                "strain": "strain=DSM 15981",
                "accession": "GCA_025149125.1",
                "taxid": 333367,
                "species_taxid": 333367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8081,
                "matched_fragments": 232,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lachnoclostridium edouardi",
                "strain": "strain=Marseille-P3397",
                "accession": "GCA_900240245.1",
                "taxid": 1926283,
                "species_taxid": 1926283,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8437,
                "matched_fragments": 79,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster bolteae",
                "strain": "strain=ATCC BAA-613",
                "accession": "GCA_002959675.1",
                "taxid": 208479,
                "species_taxid": 208479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8354,
                "matched_fragments": 111,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster bolteae",
                "strain": "strain=ATCC BAA-613",
                "accession": "GCA_002234575.2",
                "taxid": 208479,
                "species_taxid": 208479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.79,
                "matched_fragments": 110,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster bolteae",
                "strain": "strain=ATCC BAA-613",
                "accession": "GCA_000154365.1",
                "taxid": 208479,
                "species_taxid": 208479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6944,
                "matched_fragments": 109,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilistercora timonensis",
                "strain": "strain=Marseille-P3756",
                "accession": "GCA_900312975.1",
                "taxid": 2086584,
                "species_taxid": 2086584,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6704,
                "matched_fragments": 60,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster clostridioformis",
                "strain": "strain=ATCC 25537",
                "accession": "GCA_900113155.1",
                "taxid": 1531,
                "species_taxid": 1531,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3098,
                "matched_fragments": 107,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster clostridioformis",
                "strain": "strain=FDAARGOS_1529",
                "accession": "GCA_020297485.1",
                "taxid": 1531,
                "species_taxid": 1531,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.2724,
                "matched_fragments": 108,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster clostridioformis",
                "strain": "strain=NCTC11224",
                "accession": "GCA_900447015.1",
                "taxid": 1531,
                "species_taxid": 1531,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.2683,
                "matched_fragments": 108,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 64.58,
            "contamination": 0.93,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002160755.1",
                "gtdb_species": "s__Lachnoclostridium_A sp002160755",
                "ani": 98.3213,
                "matched_fragments": 776,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoclostridium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.32",
                "min_intra_species_ani": "98.32",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_019114845.1",
                "gtdb_species": "s__Lachnoclostridium_A stercoripullorum",
                "ani": 81.6031,
                "matched_fragments": 392,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoclostridium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.44",
                "min_intra_species_ani": "98.44",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019114465.1",
                "gtdb_species": "s__Lachnoclostridium_A avicola",
                "ani": 81.1157,
                "matched_fragments": 469,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoclostridium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "98.89",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019119775.1",
                "gtdb_species": "s__Lachnoclostridium_A pullistercoris",
                "ani": 80.9232,
                "matched_fragments": 432,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoclostridium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019116745.1",
                "gtdb_species": "s__Lachnoclostridium_A stercorigallinarum",
                "ani": 80.6804,
                "matched_fragments": 366,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoclostridium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "99.47",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900555045.1",
                "gtdb_species": "s__Enterocloster sp900555045",
                "ani": 78.0768,
                "matched_fragments": 212,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018715565.1",
                "gtdb_species": "s__Ventrimonas merdavium",
                "ani": 77.9349,
                "matched_fragments": 206,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ventrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
                "min_intra_species_ani": "99.46",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000158075.1",
                "gtdb_species": "s__Enterocloster asparagiformis",
                "ani": 77.8652,
                "matched_fragments": 230,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "98.33",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_018223415.1",
                "gtdb_species": "s__Copromonas sp900541255",
                "ani": 77.0738,
                "matched_fragments": 158,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Copromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.81",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_910575585.1",
                "gtdb_species": "s__UBA3402 sp910575585",
                "ani": 76.9985,
                "matched_fragments": 121,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA3402",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900549235.1",
                "gtdb_species": "s__Enterocloster sp900549235",
                "ani": 76.9227,
                "matched_fragments": 122,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "99.00",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_904420245.1",
                "gtdb_species": "s__Paralachnospira avium",
                "ani": 76.8217,
                "matched_fragments": 81,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Paralachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003464085.1",
                "gtdb_species": "s__Lachnoclostridium_A sp003464085",
                "ani": 76.6418,
                "matched_fragments": 72,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoclostridium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_005845215.1",
                "gtdb_species": "s__Enterocloster sp005845215",
                "ani": 76.5927,
                "matched_fragments": 115,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.13",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.283,
        "cell_length": 0.216,
        "doubling_h": null,
        "growth_tmp": 35.541,
        "optimum_tmp": 33.5,
        "optimum_ph": 6.475,
        "genome_size": 4928424.732,
        "gc_content": 47.09,
        "coding_genes": 4359.666,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 65.0,
        "gram_stain": 0.913,
        "sporulation": 0.933,
        "motility": 0.923,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Lachnoclostridium_A",
        "s__Lachnoclostridium_A sp002160755"
    ],
    "_genome_taxon": [
        "Lachnoclostridium",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Lachnoclostridium_A",
        "s__Lachnoclostridium_A sp002160755",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Lachnoclostridium",
        "A",
        "Lachnoclostridium",
        "A",
        "sp002160755"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}